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20.109(S22):Assignments20.109(S22):Class data20.109(S22):Communication
20.109(S22):Data Summary20.109(S22):FYI20.109(S22):Homework
20.109(S22):Journal club presentation20.109(S22):Laboratory tour20.109(S22):M1D1
20.109(S22):M1D220.109(S22):M1D320.109(S22):M1D4
20.109(S22):M1D520.109(S22):M1D620.109(S22):M1D7
20.109(S22):M1D820.109(S22):M2D120.109(S22):M2D2
20.109(S22):M2D320.109(S22):M2D420.109(S22):M2D5
20.109(S22):M2D620.109(S22):M2D720.109(S22):M2D8
20.109(S22):M3D120.109(S22):M3D220.109(S22):M3D3
20.109(S22):M3D420.109(S22):Module 120.109(S22):Module 2
20.109(S22):Module 320.109(S22):Research article20.109(S22):Research proposal presentation
20.109(S22):Research talk20.109(S22):Spring 2022 schedule20.109(S23):Assignments
20.109(S23):Class data20.109(S23):Communication20.109(S23):Data Summary
20.109(S23):FYI20.109(S23):Homework20.109(S23):Journal article presentation
20.109(S23):Laboratory tour20.109(S23):M1D120.109(S23):M1D2
20.109(S23):M1D320.109(S23):M1D420.109(S23):M1D5
20.109(S23):M1D620.109(S23):M1D720.109(S23):M1D8
20.109(S23):M2D120.109(S23):M2D220.109(S23):M2D3
20.109(S23):M2D420.109(S23):M2D520.109(S23):M2D6
20.109(S23):M2D720.109(S23):M2D820.109(S23):M3D1
20.109(S23):M3D220.109(S23):M3D320.109(S23):M3D4
20.109(S23):Module 120.109(S23):Module 220.109(S23):Module 3
20.109(S23):Research article20.109(S23):Research proposal presentation20.109(S23):Research talk
20.109(S23):Spring 2023 schedule20.109(S24):Assignments20.109(S24):Class data
20.109(S24):Communication20.109(S24):Data Summary20.109(S24):FYI
20.109(S24):Guidelines for working in the tissue culture facility20.109(S24):Homework20.109(S24):Journal article presentation
20.109(S24):Laboratory tour20.109(S24):M1D120.109(S24):M1D2
20.109(S24):M1D320.109(S24):M1D420.109(S24):M1D5
20.109(S24):M1D620.109(S24):M1D720.109(S24):M1D8
20.109(S24):M2D120.109(S24):M2D220.109(S24):M2D3
20.109(S24):M2D420.109(S24):M2D520.109(S24):M2D6
20.109(S24):M2D720.109(S24):M2D820.109(S24):M3D1
20.109(S24):M3D220.109(S24):M3D320.109(S24):M3D4
20.109(S24):Module 120.109(S24):Module 220.109(S24):Module 3
20.109(S24):Research article20.109(S24):Research proposal presentation20.109(S24):Research talk
20.109(S24):Spring 2024 schedule20.109:Lab basics20.109:Module 1
20.109:Module 220.109:Module 320.109:Module 4
20.109:OWW basics20.109:People20.109: Spring 2007 schedule
20.109 (F07): Phage by design20.109 (S07): Atomic force microscopy20.109 (S07): Transmission electron microscopy
20.109 Main Page20.309:Course Information20.309:DAQ System
20.309:Lab Report Guidelines20.309:Learning outcomes20.309:Safety
20.309: Exam 1 Topics20.309 Assignment 1: Optics bootcamp20.309 Main Page
20.309 development to-do list20.345:Course Information20.345:Final project proposal
20.345:Key Factors Table20.345:Literature search20.345:Main page
20.345: Wiki guidelinesA.Williams: Objectives and Literature Review
AFM
ANOID ProjectAdditional ResourcesAligning the optical trap
Alumni PageAperture and field stopsAssignment 1, Part 1: Pre-lab questions
Assignment 1, Part 2: Optics bootcampAssignment 1, Part 3: Building your transillumination microscope
Assignment 1, Part 3: Microscope design
Assignment 1, Part 4: Building your transilluminated microscope
Assignment 1, Part 4: Measuring magnification and bead sizeAssignment 10, Part 1: Measuring the osmotic shock response of yeast
Assignment 10 OverviewAssignment 11: Tell us about your lab visit
Assignment 1: Microscope design
Assignment 1: Optics bootcamp
Assignment 1: Pre-lab questions
Assignment 1: Transilluminated microscope
Assignment 1: Transillumination microscopy
Assignment 1 Overview: Transillumination microscopyAssignment 2: epi illuminator for fluorescence microscopy
Assignment 2: fluorescence microscopyAssignment 2 Part 1: Noise in imagesAssignment 2 Part 2: Fluorescence microscopy
Assignment 2 Part 3: Build an epi-illuminator for your microscopeAssignment 2 Part 4: Fluorescent imaging of actinAssignment 3, Part 1: visualizing actin with fluorescence contrast
Assignment 3, Part 2: experimental design with fluorescence
Assignment 3: visualizing actin using fluorescence contrast
Assignment 3: visualizing actin with fluorescence contrast
Assignment 3 OverviewAssignment 4: finding and measuring thingsAssignment 4 part 1: Make a fake image
Assignment 4 part 2: Measure resolutionAssignment 4 part 3: Track microspheres over timeAssignment 5, Part 1: MSD difference tracking and microscope stability
Assignment 5, Part 1: viscosity and diffusivity in glycerol-water mixturesAssignment 5, Part 2: live cell particle tracking of endocytosed beadsAssignment 5: Spring 2020
Assignment 5: cellular microrheology
Assignment 5 Overview
Assignment 5 navigation
Assignment 6, Part 1: Pre-lab questionsAssignment 6, Part 1: build a two-color microscopeAssignment 6, Part 2: Electronics bootcamp
Assignment 6, Part 2: electronics written problemsAssignment 6, Part 3: Identifying unknown filter circuitsAssignment 6 Overview
Assignment 6 Overview: two color microscopeAssignment 7, Part 1: op amp golden rules questionsAssignment 7, Part 2: measure temperature and fluorescence
Assignment 7, Part 3: testing your instrument and measuring a DNA melting curveAssignment 7: Amplifiers and feedbackAssignment 7 Overview
Assignment 8, Part 0: convolution practiceAssignment 8, Part 1: convolution
Assignment 8, Part 1: fabricate a microfluidic device
Assignment 8, Part 2: build a two-color microscopeAssignment 8, Part 2: fabricate a microfluidic deviceAssignment 8, Part 2: lock-in amplifier and temperature control
Assignment 8, Part 3: add flow control and test your deviceAssignment 8 OverviewAssignment 8 Overview: flow channel & two-color microscope
Assignment 9, Part 1: Analyze two-color yeast imagesAssignment 9, Part 1: model functionAssignment 9, Part 2: Simulating DNA melting data and testing the model function
Assignment 9, Part 3: Fitting your dataAssignment 9 OverviewAssignment 9 Overview: Analyzing yeast images
BEECH(F23)BEECH(F23):Build Communication ToolkitBEECH(F23):Build Community
BEECH(F23):Build KnowledgeBEECH(F23):Build Your ProjectBEECH(F23):People
BEECH(F23): 2023-2024 scheduleBEECH Main PageBE Classroom Computer Documentation
BE TA Training(Su16):HomepageBE TA Training (Su17)BE TA Training (Su18)
BE TA Training (Su19)Beam Expander ExampleBeech
Bode plotsBode plots and frequency responseBryan Hernandez/20.109/Lab notebook/Module 1/Day 2
Bryan Hernandez/20.109/Lab notebook/Module 1/Day 3Bryan Hernandez/20.109/Lab notebook/Module 1/Day 4Bryan Hernandez/20.109/Lab notebook/Module 1/Day 5
Bryan Hernandez/20.109/Lab notebook/Module 1/Day 6Bryan Hernandez/20.109/Lab notebook/Module 2/Day 2CM March14
CM March28CRISPRi module, Part II: Increasing ethanol yield in E. coli MG1655Calculating MSD and Diffusion Coefficients
Capacitors and inductorsCartridge ManipulationCell Printing
Cell Printing ExperimentationCell ReservationsCellular microrheology
Complex Number ReviewCompound Microscope ExampleConfocal Wiki
Converting Gaussian fit to Rayleigh resolutionCourse Journal -- Nathan S LachenmyerCoursework
Creating 20.109(S17):Scan slides to identify FKBP12 binders (Day5)DAQ Ribbon CableDNA Melter Improvements
DNA Melting
DNA Melting: DNA SequencesDNA Melting: Model function and parameter estimation by nonlinear regression
DNA Melting: Processing DNA Melting DataDNA Melting: Simulating DNA Melting - BasicsDNA Melting: Simulating DNA Melting - Intermediate Topics
DNA Melting: Using the Basic DNAMelter GUIDNA Melting: Using the LockIn DNAMelter GUIDNA Melting: Using the Matlab DNAMelter GUI
DNA Melting II: Using the Matlab DNALockIn GUIDNA Melting Part 1: Measuring Temperature and Fluorescence
DNA Melting Part 1: Simulating DNA Melting - Basics
DNA Melting Part 2: Lock-in Amplifier and Temperature Control
DNA Melting Part 2: Measuring Temperature and Fluorescence
DNA Melting Part 3: Simulating DNA Melting - Intermediate Topcs
DNA Melting Part 3: Simulating DNA Melting - Intermediate Topics
DNA Melting Part 4: Lock-in Amplifier and Temperature Control
DNA Melting Report Requirements
DNA Melting Report Requirements for Part 1
DNA Melting Report Requirements for Part 2
DNA Melting Thermodynamics
DNA melting: Identifying the unknown sampleDNA melting lab wiki pagesData Sheets
Deconvolved ImageDevelop Research proposal ideas and presentationsDevice Creation
ESTORMElectronics Mini-Lab
Electronics Module
Electronics Primer
Electronics boot camp I: passive circuits and transfer functionsElectronics boot camp lab part 1
Electronics bootcamp II: feedback systemsElectronics primerElectronics written problems
Electronics written problems IIEmmanuel QuirozEquipment on loan
Error analysisEstimating second order system parameters from noise power spectra using nonlinear regressionExam 2 study guide
FPGA Design EnvironmentFall 2010: DNA melting report outline
Fall 2010: Microscopy report outline
Fall 2010: Problem Set 3Fall 2010 SyllabusFall 2012: Journal Presentations
Final Project: Spatial Light Modulator Galore
Final Project -- Nathan S LachenmyerFinal Project Proposal Williams
Final ProjectsFinding and measuring thingsFlat-field correction
Fluorescence Imaging of Actin Cytoskeleton
Geometrical OpticsGeometrical optics and ray tracing
Hattie Chung
Identifying the unknown DNA sample
Impedance Analysis
In silico cloning of pdCas9 constructInkjet TechnologiesInput and output impedance
Intro Electronics Lab ReportIntroductionKey Project Elements
Key estimatesLab 1 Report -- Nathan S LachenmyerLab 2 Report -- Nathan S Lachenmyer
Lab Manual:Atomic Force Microscopy (AFM)
Lab Manual:Intro to electronics
Lab Manual:Introduction to electronics
Lab Manual:Measuring DNA Melting Curves
Lab Manual:Optical Microscopy
Lab Manual:Optical Trapping
Lab Manual:Processing DNA Melting Data
Lab Manual: Atomic Force Microscopy (AFM)Lab Manual: Limits of Detection
Lab Manual: Measuring DNA Melting CurvesLab Manual: Optical MicroscopyLab Manual: SLA 3D-Printed Microfluidic Device Master Mold
Lab Report Guidelines
Lab orientationLaser cutter safe operating procedure
Lecture Notes:Modeling real systems with ideal elementsLimits of Detection:Report RequirementsLimits of Detection: Data Sessions
Limits of Detection: Lab Manual
Locating objects in a fluorescent microscopic imageMATLAB: Estimating resolution from a PSF slide image
MATLAB: Estimating viscoelastic spectrum using Mason's methodMATLAB: Intensity-weighted centroid noise formulaMRI lab: FPGA controller documentation
MSD of Sum and Difference TrajectoriesMain PageManta G032 camera measurements
March14Matlab:Division operatorsMatlab:Image Processing for Fluorescent Microscopy
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