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20.109(S23):M1D5	20.109(S23):M1D6	20.109(S23):M1D7
20.109(S23):M1D8	20.109(S23):M2D1	20.109(S23):M2D2
20.109(S23):M2D3	20.109(S23):M2D4	20.109(S23):M2D5
20.109(S23):M2D6	20.109(S23):M2D7	20.109(S23):M2D8
20.109(S23):M3D1	20.109(S23):M3D2	20.109(S23):M3D3
20.109(S23):M3D4	20.109(S23):Module 1	20.109(S23):Module 2
20.109(S23):Module 3	20.109(S23):Research article	20.109(S23):Research proposal presentation
20.109(S23):Research talk	20.109(S23):Spring 2023 schedule	20.109(S24):Assignments
20.109(S24):Class data	20.109(S24):Communication	20.109(S24):Data Summary
20.109(S24):FYI	20.109(S24):Guidelines for working in the tissue culture facility	20.109(S24):Homework
20.109(S24):Journal article presentation	20.109(S24):Laboratory tour	20.109(S24):M1D1
20.109(S24):M1D2	20.109(S24):M1D3	20.109(S24):M1D4
20.109(S24):M1D5	20.109(S24):M1D6	20.109(S24):M1D7
20.109(S24):M1D8	20.109(S24):M2D1	20.109(S24):M2D2
20.109(S24):M2D3	20.109(S24):M2D4	20.109(S24):M2D5
20.109(S24):M2D6	20.109(S24):M2D7	20.109(S24):M2D8
20.109(S24):M3D1	20.109(S24):M3D2	20.109(S24):M3D3
20.109(S24):M3D4	20.109(S24):Module 1	20.109(S24):Module 2
20.109(S24):Module 3	20.109(S24):Research article	20.109(S24):Research proposal presentation
20.109(S24):Research talk	20.109(S24):Spring 2024 schedule	20.109:Lab basics
20.109:Module 1	20.109:Module 2	20.109:Module 3
20.109:Module 4	20.109:OWW basics	20.109:People
20.109: Spring 2007 schedule	20.109 (F07): Phage by design	20.109 (S07): Atomic force microscopy
20.109 (S07): Transmission electron microscopy	20.109 Main Page	20.309:Course Information
20.309:DAQ System	20.309:Lab Report Guidelines	20.309:Learning outcomes
20.309:Safety	20.309: Exam 1 Topics	20.309 Assignment 1: Optics bootcamp
20.309 Main Page	20.309 development to-do list	20.345:Course Information
20.345:Final project proposal	20.345:Key Factors Table	20.345:Literature search
20.345:Main page	20.345: Wiki guidelines	A.Williams: Objectives and Literature Review
AFM	ANOID Project	Additional Resources
Aligning the optical trap	Alumni Page	Aperture and field stops
Assignment 1, Part 1: Pre-lab questions	Assignment 1, Part 2: Optics bootcamp	Assignment 1, Part 3: Building your transillumination microscope
Assignment 1, Part 3: Microscope design	Assignment 1, Part 4: Building your transilluminated microscope	Assignment 1, Part 4: Measuring magnification and bead size
Assignment 10, Part 1: Measuring the osmotic shock response of yeast	Assignment 10 Overview	Assignment 11: Tell us about your lab visit
Assignment 1: Microscope design	Assignment 1: Optics bootcamp	Assignment 1: Pre-lab questions
Assignment 1: Transilluminated microscope	Assignment 1: Transillumination microscopy	Assignment 1 Overview: Transillumination microscopy
Assignment 2: epi illuminator for fluorescence microscopy	Assignment 2: fluorescence microscopy	Assignment 2 Part 1: Noise in images
Assignment 2 Part 2: Fluorescence microscopy	Assignment 2 Part 3: Build an epi-illuminator for your microscope	Assignment 2 Part 4: Fluorescent imaging of actin
Assignment 3, Part 1: visualizing actin with fluorescence contrast	Assignment 3, Part 2: experimental design with fluorescence	Assignment 3: visualizing actin using fluorescence contrast
Assignment 3: visualizing actin with fluorescence contrast	Assignment 3 Overview	Assignment 4: finding and measuring things
Assignment 4 part 1: Make a fake image	Assignment 4 part 2: Measure resolution	Assignment 4 part 3: Track microspheres over time
Assignment 5, Part 1: MSD difference tracking and microscope stability	Assignment 5, Part 1: viscosity and diffusivity in glycerol-water mixtures	Assignment 5, Part 2: live cell particle tracking of endocytosed beads
Assignment 5: Spring 2020	Assignment 5: cellular microrheology	Assignment 5 Overview
Assignment 5 navigation	Assignment 6, Part 1: Pre-lab questions	Assignment 6, Part 1: build a two-color microscope
Assignment 6, Part 2: Electronics bootcamp	Assignment 6, Part 2: electronics written problems	Assignment 6, Part 3: Identifying unknown filter circuits
Assignment 6 Overview	Assignment 6 Overview: two color microscope	Assignment 7, Part 1: op amp golden rules questions
Assignment 7, Part 2: measure temperature and fluorescence	Assignment 7, Part 3: testing your instrument and measuring a DNA melting curve	Assignment 7: Amplifiers and feedback
Assignment 7 Overview	Assignment 8, Part 0: convolution practice	Assignment 8, Part 1: convolution
Assignment 8, Part 1: fabricate a microfluidic device	Assignment 8, Part 2: build a two-color microscope	Assignment 8, Part 2: fabricate a microfluidic device
Assignment 8, Part 2: lock-in amplifier and temperature control	Assignment 8, Part 3: add flow control and test your device	Assignment 8 Overview
Assignment 8 Overview: flow channel & two-color microscope	Assignment 9, Part 1: Analyze two-color yeast images	Assignment 9, Part 1: model function
Assignment 9, Part 2: Simulating DNA melting data and testing the model function	Assignment 9, Part 3: Fitting your data	Assignment 9 Overview
Assignment 9 Overview: Analyzing yeast images	BEECH(F23)	BEECH(F23):Build Communication Toolkit
BEECH(F23):Build Community	BEECH(F23):Build Knowledge	BEECH(F23):Build Your Project
BEECH(F23):People	BEECH(F23): 2023-2024 schedule	BEECH Main Page
BE Classroom Computer Documentation	BE TA Training(Su16):Homepage	BE TA Training (Su17)
BE TA Training (Su18)	BE TA Training (Su19)	Beam Expander Example
Beech	Bode plots	Bode plots and frequency response
Bryan Hernandez/20.109/Lab notebook/Module 1/Day 2	Bryan Hernandez/20.109/Lab notebook/Module 1/Day 3	Bryan Hernandez/20.109/Lab notebook/Module 1/Day 4
Bryan Hernandez/20.109/Lab notebook/Module 1/Day 5	Bryan Hernandez/20.109/Lab notebook/Module 1/Day 6	Bryan Hernandez/20.109/Lab notebook/Module 2/Day 2
CM March14	CM March28	CRISPRi module, Part II: Increasing ethanol yield in E. coli MG1655
Calculating MSD and Diffusion Coefficients	Capacitors and inductors	Cartridge Manipulation
Cell Printing	Cell Printing Experimentation	Cell Reservations
Cellular microrheology	Complex Number Review	Compound Microscope Example
Confocal Wiki	Converting Gaussian fit to Rayleigh resolution	Course Journal -- Nathan S Lachenmyer
Coursework	Creating 20.109(S17):Scan slides to identify FKBP12 binders (Day5)	DAQ Ribbon Cable
DNA Melter Improvements	DNA Melting	DNA Melting: DNA Sequences
DNA Melting: Model function and parameter estimation by nonlinear regression	DNA Melting: Processing DNA Melting Data	DNA Melting: Simulating DNA Melting - Basics
DNA Melting: Simulating DNA Melting - Intermediate Topics	DNA Melting: Using the Basic DNAMelter GUI	DNA Melting: Using the LockIn DNAMelter GUI
DNA Melting: Using the Matlab DNAMelter GUI	DNA Melting II: Using the Matlab DNALockIn GUI	DNA Melting Part 1: Measuring Temperature and Fluorescence
DNA Melting Part 1: Simulating DNA Melting - Basics	DNA Melting Part 2: Lock-in Amplifier and Temperature Control	DNA Melting Part 2: Measuring Temperature and Fluorescence
DNA Melting Part 3: Simulating DNA Melting - Intermediate Topcs	DNA Melting Part 3: Simulating DNA Melting - Intermediate Topics	DNA Melting Part 4: Lock-in Amplifier and Temperature Control
DNA Melting Report Requirements	DNA Melting Report Requirements for Part 1	DNA Melting Report Requirements for Part 2
DNA Melting Thermodynamics	DNA melting: Identifying the unknown sample	DNA melting lab wiki pages
Data Sheets	Deconvolved Image	Develop Research proposal ideas and presentations
Device Creation	ESTORM	Electronics Mini-Lab
Electronics Module	Electronics Primer	Electronics boot camp I: passive circuits and transfer functions
Electronics boot camp lab part 1	Electronics bootcamp II: feedback systems	Electronics primer
Electronics written problems	Electronics written problems II	Emmanuel Quiroz
Equipment on loan	Error analysis	Estimating second order system parameters from noise power spectra using nonlinear regression
Exam 2 study guide	FPGA Design Environment	Fall 2010: DNA melting report outline
Fall 2010: Microscopy report outline	Fall 2010: Problem Set 3	Fall 2010 Syllabus
Fall 2012: Journal Presentations	Final Project: Spatial Light Modulator Galore	Final Project -- Nathan S Lachenmyer
Final Project Proposal Williams	Final Projects	Finding and measuring things
Flat-field correction	Fluorescence Imaging of Actin Cytoskeleton	Geometrical Optics
Geometrical optics and ray tracing	Hattie Chung	Identifying the unknown DNA sample
Impedance Analysis	In silico cloning of pdCas9 construct	Inkjet Technologies
Input and output impedance	Intro Electronics Lab Report	Introduction
Key Project Elements	Key estimates	Lab 1 Report -- Nathan S Lachenmyer
Lab 2 Report -- Nathan S Lachenmyer	Lab Manual:Atomic Force Microscopy (AFM)	Lab Manual:Intro to electronics
Lab Manual:Introduction to electronics	Lab Manual:Measuring DNA Melting Curves	Lab Manual:Optical Microscopy
Lab Manual:Optical Trapping	Lab Manual:Processing DNA Melting Data	Lab Manual: Atomic Force Microscopy (AFM)
Lab Manual: Limits of Detection	Lab Manual: Measuring DNA Melting Curves	Lab Manual: Optical Microscopy
Lab Manual: SLA 3D-Printed Microfluidic Device Master Mold	Lab Report Guidelines	Lab orientation
Laser cutter safe operating procedure	Lecture Notes:Modeling real systems with ideal elements	Limits of Detection:Report Requirements
Limits of Detection: Data Sessions	Limits of Detection: Lab Manual	Locating objects in a fluorescent microscopic image
MATLAB: Estimating resolution from a PSF slide image	MATLAB: Estimating viscoelastic spectrum using Mason's method	MATLAB: Intensity-weighted centroid noise formula
MRI lab: FPGA controller documentation	MSD of Sum and Difference Trajectories	Main Page
Manta G032 camera measurements	March14	Matlab:Division operators
Matlab:Image Processing for Fluorescent Microscopy	Matlab:Matlab Fundamentals	Matlab:Simulating DNA Melting
Matlab:Simulating DNA melting	Matlab: Scalebars	Matlab: Simulating Brownian motion
Measuring biological forces mini-lab	Measuring optical magnification	Methods
Microrheology Measurements via Particle Tracking	Microscope Objective Lenses	Microscopy report general guidelines
Microscopy report outline	More info on BJC2100 Attempt	Nonlinear regression
Objective	Optical Microscopy: Brownian motion and microscope stability	Optical Microscopy: Brownian motion and microscopy stability
Optical Microscopy: Construction of a microscope	Optical Microscopy: Fluorescence Microscopy	Optical Microscopy: Part 1 Report Outline
Optical Microscopy: Part 2 Report Outline	Optical Microscopy: Part 3 Report Outline	Optical Microscopy: Part 4 Report Outline
Optical Microscopy Data Sheets	Optical Microscopy Part 1: Bright Field Microscopy	Optical Microscopy Part 1: Brightfield Microscopy
Optical Microscopy Part 1b: Geometrical Optics and Ray Tracing	Optical Microscopy Part 1b: Ray Tracing	Optical Microscopy Part 1c: Physical Optics and Limits of Detection
Optical Microscopy Part 1d: Noise Sources in Light Detection	Optical Microscopy Part 2: Fluorescence Microscopy	Optical Microscopy Part 2b: High Resolution Microscopy Techniques
Optical Microscopy Part 3: Particle Tracking	Optical Microscopy Part 3: Particle Tracking Applications	Optical Microscopy Part 3: Resolution, Stability, and Particle Tracking
Optical Microscopy Part 3: Resolution and Stability	Optical Microscopy Part 3a: Particle Tracking	Optical Microscopy Part 3a: Particle Tracking in Glycerin Samples
Optical Microscopy Part 3b: Microrheology Measurements in Fibroblast Cells	Optical Microscopy Part 3b: Microrheology Measurements in Live Fibroblast Cells	Optical Microscopy Part 3c: Fluorescence Imaging of Actin Cytoskeleton
Optical Microscopy Part 3c: Protocols for cell culture, cell fixing and cell imaging	Optical Microscopy Part 4: Microrheology Measurements in Fibroblast Cells	Optical Microscopy Part 4: Particle Tracking
Optical Microscopy Week 1: Bright Field Microscopy	Optical Microscopy Week 1: Brightfield Microscopy	Optical Microscopy Week 1: Build a brightfield microscope

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