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Previous page (20.109(S14):Testing cell viability (Day3))
20.109(S22):Research talk
20.109(S22):Spring 2022 schedule
20.109(S23):Assignments
20.109(S23):Class data
20.109(S23):Communication
20.109(S23):Data Summary
20.109(S23):FYI
20.109(S23):Homework
20.109(S23):Journal article presentation
20.109(S23):Laboratory tour
20.109(S23):M1D1
20.109(S23):M1D2
20.109(S23):M1D3
20.109(S23):M1D4
20.109(S23):M1D5
20.109(S23):M1D6
20.109(S23):M1D7
20.109(S23):M1D8
20.109(S23):M2D1
20.109(S23):M2D2
20.109(S23):M2D3
20.109(S23):M2D4
20.109(S23):M2D5
20.109(S23):M2D6
20.109(S23):M2D7
20.109(S23):M2D8
20.109(S23):M3D1
20.109(S23):M3D2
20.109(S23):M3D3
20.109(S23):M3D4
20.109(S23):Module 1
20.109(S23):Module 2
20.109(S23):Module 3
20.109(S23):Research article
20.109(S23):Research proposal presentation
20.109(S23):Research talk
20.109(S23):Spring 2023 schedule
20.109(S24):Assignments
20.109(S24):Class data
20.109(S24):Communication
20.109(S24):Data Summary
20.109(S24):FYI
20.109(S24):Guidelines for working in the tissue culture facility
20.109(S24):Homework
20.109(S24):Journal article presentation
20.109(S24):Laboratory tour
20.109(S24):M1D1
20.109(S24):M1D2
20.109(S24):M1D3
20.109(S24):M1D4
20.109(S24):M1D5
20.109(S24):M1D6
20.109(S24):M1D7
20.109(S24):M1D8
20.109(S24):M2D1
20.109(S24):M2D2
20.109(S24):M2D3
20.109(S24):M2D4
20.109(S24):M2D5
20.109(S24):M2D6
20.109(S24):M2D7
20.109(S24):M2D8
20.109(S24):M3D1
20.109(S24):M3D2
20.109(S24):M3D3
20.109(S24):M3D4
20.109(S24):Module 1
20.109(S24):Module 2
20.109(S24):Module 3
20.109(S24):Research article
20.109(S24):Research proposal presentation
20.109(S24):Research talk
20.109(S24):Spring 2024 schedule
20.109:Lab basics
20.109:Module 1
20.109:Module 2
20.109:Module 3
20.109:Module 4
20.109:OWW basics
20.109:People
20.109: Spring 2007 schedule
20.109 (F07): Phage by design
20.109 (S07): Atomic force microscopy
20.109 (S07): Transmission electron microscopy
20.109 Main Page
20.309:Course Information
20.309:DAQ System
20.309:Lab Report Guidelines
20.309:Learning outcomes
20.309:Safety
20.309: Exam 1 Topics
20.309 Assignment 1: Optics bootcamp
20.309 Main Page
20.309 development to-do list
20.345:Course Information
20.345:Final project proposal
20.345:Key Factors Table
20.345:Literature search
20.345:Main page
20.345: Wiki guidelines
A.Williams: Objectives and Literature Review
AFM
ANOID Project
Additional Resources
Aligning the optical trap
Alumni Page
Aperture and field stops
Assignment 1, Part 1: Pre-lab questions
Assignment 1, Part 2: Optics bootcamp
Assignment 1, Part 3: Building your transillumination microscope
Assignment 1, Part 3: Microscope design
Assignment 1, Part 4: Building your transilluminated microscope
Assignment 1, Part 4: Measuring magnification and bead size
Assignment 10, Part 1: Measuring the osmotic shock response of yeast
Assignment 10 Overview
Assignment 11: Tell us about your lab visit
Assignment 1: Microscope design
Assignment 1: Optics bootcamp
Assignment 1: Pre-lab questions
Assignment 1: Transilluminated microscope
Assignment 1: Transillumination microscopy
Assignment 1 Overview: Transillumination microscopy
Assignment 2: epi illuminator for fluorescence microscopy
Assignment 2: fluorescence microscopy
Assignment 2 Part 1: Noise in images
Assignment 2 Part 2: Fluorescence microscopy
Assignment 2 Part 3: Build an epi-illuminator for your microscope
Assignment 2 Part 4: Fluorescent imaging of actin
Assignment 3, Part 1: visualizing actin with fluorescence contrast
Assignment 3, Part 2: experimental design with fluorescence
Assignment 3: visualizing actin using fluorescence contrast
Assignment 3: visualizing actin with fluorescence contrast
Assignment 3 Overview
Assignment 4: finding and measuring things
Assignment 4 part 1: Make a fake image
Assignment 4 part 2: Measure resolution
Assignment 4 part 3: Track microspheres over time
Assignment 5, Part 1: MSD difference tracking and microscope stability
Assignment 5, Part 1: viscosity and diffusivity in glycerol-water mixtures
Assignment 5, Part 2: live cell particle tracking of endocytosed beads
Assignment 5: Spring 2020
Assignment 5: cellular microrheology
Assignment 5 Overview
Assignment 5 navigation
Assignment 6, Part 1: Pre-lab questions
Assignment 6, Part 1: build a two-color microscope
Assignment 6, Part 2: Electronics bootcamp
Assignment 6, Part 2: electronics written problems
Assignment 6, Part 3: Identifying unknown filter circuits
Assignment 6 Overview
Assignment 6 Overview: two color microscope
Assignment 7, Part 1: op amp golden rules questions
Assignment 7, Part 2: measure temperature and fluorescence
Assignment 7, Part 3: testing your instrument and measuring a DNA melting curve
Assignment 7: Amplifiers and feedback
Assignment 7 Overview
Assignment 8, Part 0: convolution practice
Assignment 8, Part 1: convolution
Assignment 8, Part 1: fabricate a microfluidic device
Assignment 8, Part 2: build a two-color microscope
Assignment 8, Part 2: fabricate a microfluidic device
Assignment 8, Part 2: lock-in amplifier and temperature control
Assignment 8, Part 3: add flow control and test your device
Assignment 8 Overview
Assignment 8 Overview: flow channel & two-color microscope
Assignment 9, Part 1: Analyze two-color yeast images
Assignment 9, Part 1: model function
Assignment 9, Part 2: Simulating DNA melting data and testing the model function
Assignment 9, Part 3: Fitting your data
Assignment 9 Overview
Assignment 9 Overview: Analyzing yeast images
BEECH(F23)
BEECH(F23):Build Communication Toolkit
BEECH(F23):Build Community
BEECH(F23):Build Knowledge
BEECH(F23):Build Your Project
BEECH(F23):People
BEECH(F23): 2023-2024 schedule
BEECH Main Page
BE Classroom Computer Documentation
BE TA Training(Su16):Homepage
BE TA Training (Su17)
BE TA Training (Su18)
BE TA Training (Su19)
Beam Expander Example
Beech
Bode plots
Bode plots and frequency response
Bryan Hernandez/20.109/Lab notebook/Module 1/Day 2
Bryan Hernandez/20.109/Lab notebook/Module 1/Day 3
Bryan Hernandez/20.109/Lab notebook/Module 1/Day 4
Bryan Hernandez/20.109/Lab notebook/Module 1/Day 5
Bryan Hernandez/20.109/Lab notebook/Module 1/Day 6
Bryan Hernandez/20.109/Lab notebook/Module 2/Day 2
CM March14
CM March28
CRISPRi module, Part II: Increasing ethanol yield in E. coli MG1655
Calculating MSD and Diffusion Coefficients
Capacitors and inductors
Cartridge Manipulation
Cell Printing
Cell Printing Experimentation
Cell Reservations
Cellular microrheology
Complex Number Review
Compound Microscope Example
Confocal Wiki
Converting Gaussian fit to Rayleigh resolution
Course Journal -- Nathan S Lachenmyer
Coursework
Creating 20.109(S17):Scan slides to identify FKBP12 binders (Day5)
DAQ Ribbon Cable
DNA Melter Improvements
DNA Melting
DNA Melting: DNA Sequences
DNA Melting: Model function and parameter estimation by nonlinear regression
DNA Melting: Processing DNA Melting Data
DNA Melting: Simulating DNA Melting - Basics
DNA Melting: Simulating DNA Melting - Intermediate Topics
DNA Melting: Using the Basic DNAMelter GUI
DNA Melting: Using the LockIn DNAMelter GUI
DNA Melting: Using the Matlab DNAMelter GUI
DNA Melting II: Using the Matlab DNALockIn GUI
DNA Melting Part 1: Measuring Temperature and Fluorescence
DNA Melting Part 1: Simulating DNA Melting - Basics
DNA Melting Part 2: Lock-in Amplifier and Temperature Control
DNA Melting Part 2: Measuring Temperature and Fluorescence
DNA Melting Part 3: Simulating DNA Melting - Intermediate Topcs
DNA Melting Part 3: Simulating DNA Melting - Intermediate Topics
DNA Melting Part 4: Lock-in Amplifier and Temperature Control
DNA Melting Report Requirements
DNA Melting Report Requirements for Part 1
DNA Melting Report Requirements for Part 2
DNA Melting Thermodynamics
DNA melting: Identifying the unknown sample
DNA melting lab wiki pages
Data Sheets
Deconvolved Image
Develop Research proposal ideas and presentations
Device Creation
ESTORM
Electronics Mini-Lab
Electronics Module
Electronics Primer
Electronics boot camp I: passive circuits and transfer functions
Electronics boot camp lab part 1
Electronics bootcamp II: feedback systems
Electronics primer
Electronics written problems
Electronics written problems II
Emmanuel Quiroz
Equipment on loan
Error analysis
Estimating second order system parameters from noise power spectra using nonlinear regression
Exam 2 study guide
FPGA Design Environment
Fall 2010: DNA melting report outline
Fall 2010: Microscopy report outline
Fall 2010: Problem Set 3
Fall 2010 Syllabus
Fall 2012: Journal Presentations
Final Project: Spatial Light Modulator Galore
Final Project -- Nathan S Lachenmyer
Final Project Proposal Williams
Final Projects
Finding and measuring things
Flat-field correction
Fluorescence Imaging of Actin Cytoskeleton
Geometrical Optics
Geometrical optics and ray tracing
Hattie Chung
Identifying the unknown DNA sample
Impedance Analysis
In silico cloning of pdCas9 construct
Inkjet Technologies
Input and output impedance
Intro Electronics Lab Report
Introduction
Key Project Elements
Key estimates
Lab 1 Report -- Nathan S Lachenmyer
Lab 2 Report -- Nathan S Lachenmyer
Lab Manual:Atomic Force Microscopy (AFM)
Lab Manual:Intro to electronics
Lab Manual:Introduction to electronics
Lab Manual:Measuring DNA Melting Curves
Lab Manual:Optical Microscopy
Lab Manual:Optical Trapping
Lab Manual:Processing DNA Melting Data
Lab Manual: Atomic Force Microscopy (AFM)
Lab Manual: Limits of Detection
Lab Manual: Measuring DNA Melting Curves
Lab Manual: Optical Microscopy
Lab Manual: SLA 3D-Printed Microfluidic Device Master Mold
Lab Report Guidelines
Lab orientation
Laser cutter safe operating procedure
Lecture Notes:Modeling real systems with ideal elements
Limits of Detection:Report Requirements
Limits of Detection: Data Sessions
Limits of Detection: Lab Manual
Locating objects in a fluorescent microscopic image
MATLAB: Estimating resolution from a PSF slide image
MATLAB: Estimating viscoelastic spectrum using Mason's method
MATLAB: Intensity-weighted centroid noise formula
MRI lab: FPGA controller documentation
MSD of Sum and Difference Trajectories
Main Page
Manta G032 camera measurements
March14
Matlab:Division operators
Matlab:Image Processing for Fluorescent Microscopy
Matlab:Matlab Fundamentals
Matlab:Simulating DNA Melting
Matlab:Simulating DNA melting
Matlab: Scalebars
Matlab: Simulating Brownian motion
Measuring biological forces mini-lab
Measuring optical magnification
Methods
Microrheology Measurements via Particle Tracking
Microscope Objective Lenses
Microscopy report general guidelines
Microscopy report outline
More info on BJC2100 Attempt
Nonlinear regression
Objective
Optical Microscopy: Brownian motion and microscope stability
Optical Microscopy: Brownian motion and microscopy stability
Optical Microscopy: Construction of a microscope
Optical Microscopy: Fluorescence Microscopy
Optical Microscopy: Part 1 Report Outline
Optical Microscopy: Part 2 Report Outline
Optical Microscopy: Part 3 Report Outline
Optical Microscopy: Part 4 Report Outline
Optical Microscopy Data Sheets
Optical Microscopy Part 1: Bright Field Microscopy
Optical Microscopy Part 1: Brightfield Microscopy
Optical Microscopy Part 1b: Geometrical Optics and Ray Tracing
Optical Microscopy Part 1b: Ray Tracing
Optical Microscopy Part 1c: Physical Optics and Limits of Detection
Optical Microscopy Part 1d: Noise Sources in Light Detection
Optical Microscopy Part 2: Fluorescence Microscopy
Optical Microscopy Part 2b: High Resolution Microscopy Techniques
Optical Microscopy Part 3: Particle Tracking
Previous page (20.109(S14):Testing cell viability (Day3))
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