Difference between revisions of "20.109(S14): Spring 2014 schedule"

Latest revision as of 13:58, 29 July 2015

20.109(S14): Laboratory Fundamentals of Biological Engineering

Home Schedule Spring 2014 Assignments
Module 1 Module 2 Module 3

MODULE	DAY	DATE	LECTURER	TA	LAB	NOTES
		Tue/Wed Feb 4/5	ANS]	Chris]	Orientation	Introductory Lecture (PDF) T/R Pre-Lab W/F Pre-Lab

1	1	Thur/Fri Feb 6/7	JR	Chris]	Microbial DNA extraction	lab orientation quiz Lecture L1 Notes T/R Pre-Lab W/F Pre-Lab
1	2	Tue/Wed Feb 11/12	JR	Chris]	Diagnostic primer design	Lecture L2 Notes T/R Pre-lab W/F Pre-Lab
1	3	Thur/Fri Feb 13/14	JR	Chris]	16S PCR and paper discussion	lab quiz Lecture L3 Notes T/R Pre-lab W/F Pre-Lab WAC lecture, talks
		President's Day Feb 17				No lab Feb 18 or Feb 19
1	4	Thur/Fri Feb 20/21	JR	Chris]	DNA cloning	L4 Notes T/R Pre-lab W/F Pre-Lab WAC lecture, figures
1	5	Tue/Wed Feb 25/26	JR	Chris]	DNA sequencing	lab quiz Lecture L5 notes T/R Pre-lab W/F Pre-lab
1	6	Thur/Fri Feb 27/28	JR	Chris]	Journal club I	Lecture L6 notes
1	7	Tue/Wed Mar 4/5	JR	Chris]	Phylogenetic and primer analyses	Lecture T/R Pre-lab W/F Pre-Lab
1	8	Thur/Fri Mar 6/7	JR	Chris]	Journal club II	lab quiz Lecture L7/8 notes WAC lecture, abstracts

2	1	Tue/Wed Mar 11/12	LS	SV]	Introduction to cell strains and plating	Lecture T/R Prelab W/F Pre-Lab WAC lecture, IMRD Draft Mod 1 Abstract and Summary Due WED 1 PM
2	2	Thur/Fri Mar 13/14	LS	SV]	Begin Western protein analysis	Lecture T/R Prelab W/F Pre-Lab
2	3	Tue/Wed Mar 18/19	LS	SV]	Choose system conditions and paper discussion	Mod 1 Memo Due lab quiz Lecture T/R Pre-Lab W/F Pre-Lab
2	4	Thur/Fri Mar 20/21	LS	SV]	Complete Western and prepare damaged DNA	Lecture T/R Pre-lab W/F Pre-Lab
		Spring Break Mar 24-28				No lab all week
2	5	Tue/Wed Apr 1/2	LS	SV]	Cell preparation for DNA repair assays	lab quiz Lecture T/R Pre-Lab W/F Pre-Lab
2	6	Thur/Fri Apr 3/4	LS	SV]	DNA repair assays	Lecture T/R Pre-Lab W/F Pre-Lab Final Mod 1 Abstract and Summary Due
2	7	Tue/Wed Apr 8/9	LS	SV]	Data analysis	lab quiz Lecture T/R Pre-Lab W/F Pre-Lab
3	1	Thur/Fri Apr 10/11	ANS]	RKA]	Design experiment	Lecture T/R Pre-Lab W/F Pre-Lab
3	2	Tue/Wed Apr 15/16	ANS]	RKA]	Initiate cell culture	lab quiz Lecture
3	3	Thur/Fri Apr 17/18	ANS]	RKA]	Testing cell viability	Lecture
		Patriot's Day April 21-22				No lab Apr 22 or Apr 23 Mod 2 Report Due

3	4	Thu/Fri Apr 24/25	ANS]	RKA]	Preparing cells for analysis	lab quiz Lecture T/R Pre-Lab W/F Pre-Lab
		Tue/Wed Apr 29/30				No lecture or lab today.
3	5	Thur/Fri May 1/2	ANS]	RKA]	Initiating transcript and protein assays	Lecture T/R Pre-Lab W/F Pre-Lab
3	6	Tue/Wed May 6/7	ANS]	RKA]	Transcript-level analysis	lab quiz Lecture T/R Pre-Lab W/F Pre-Lab
3	7	Thur/Fri May 8/9	ANS]	RKA]	Protein-level and wrap-up analysis	Mod 3 Mini-report Due T/R Pre-Lab W/F Pre-Lab
3	8	Tue/Wed May 13/14	ANS]	RKA]	Student presentations

		Thur May 15			No lab session. Meet in 16-220 from 11am-1pm: feedback/discussion about class, then celebratory lunch etc.

@@ Line 16: / Line 16: @@
 |
 | Tue/Wed Feb 4/5
-| [[User:AgiStachowiak | ANS]]
+| [http://openwetware.org/wiki/User:AgiStachowiak  | ANS]
-| [[User:Christopher Bandoro| Chris]]
+| [http://openwetware.org/wiki/User:Christopher_Bandoro | Chris]
 | [[20.109(S14):Lab tour | Orientation]]
 | [[Media:20.109 OrientLect(S14).pdf | Introductory Lecture (PDF)]]<br>[[Media:M1D0_F14_SKH_prelab_final.pdf | T/R Pre-Lab]]<br>[[Media:S14_D0-ANS.pdf| W/F Pre-Lab]]
@@ Line 27: / Line 27: @@
 | Thur/Fri Feb 6/7
 | [http://web.mit.edu/be/people/runstadler.shtml JR]
-| [[User:Christopher Bandoro| Chris]]
+| [http://openwetware.org/wiki/User:Christopher_Bandoro | Chris]
 | [[20.109(S14):Microbial DNA extraction (Day1) | Microbial DNA extraction]]
 |<font color=green>lab orientation quiz</font color><br>[[Media:S14_M1D1-Lecture.pdf | Lecture]]<br>[[Media: S14M1-JonR_Lecture1_Outline.doc | L1 Notes]]<br>[[Media:M1D1_S14_lab_SKH_final.pdf | T/R Pre-Lab]] <br>[[Media:S14_M1D1-ANS.pdf | W/F Pre-Lab]]
@@ Line 35: / Line 35: @@
 | Tue/Wed Feb 11/12
 | [http://web.mit.edu/be/people/runstadler.shtml JR]
-| [[User:Christopher Bandoro| Chris]]
+| [http://openwetware.org/wiki/User:Christopher_Bandoro | Chris]
 | [[20.109(S14):Diagnostic primer design (Day2) | Diagnostic primer design]]
 | [[Media:S14_M1D2-Lecture.pdf | Lecture]]<br>[[Media: S14M1-JonR_Lecture2_Outline.doc | L2 Notes]]<br>[[Media:M1D2_S14_SKH_final.pdf | T/R Pre-lab]]<br>[[Media:S14_M1D2-ANS.pdf | W/F Pre-Lab]]
@@ Line 43: / Line 43: @@
 | Thur/Fri Feb 13/14
 | [http://web.mit.edu/be/people/runstadler.shtml JR]
-| [[User:Christopher Bandoro| Chris]]
+| [http://openwetware.org/wiki/User:Christopher_Bandoro | Chris]
 | [[20.109(S14):16S PCR and paper discussion (Day3)| 16S PCR and paper discussion]]
 | <font color=green>lab quiz</font color><br>[[Media:S14_M1D3-Lecture.pdf | Lecture]]<br>[[Media: S14M1-JonR_Lecture3_Outline.docx | L3 Notes]]<br>[[Media:M1D3_S14_SKH_final.pdf | T/R Pre-lab]]<br>[[Media:S14_M1D3-ANS.pdf | W/F Pre-Lab]]<br>[[Media:20.109_Presentation-basics_S14_Atissa.pdf | WAC lecture, talks]]
@@ Line 56: / Line 56: @@
 | Thur/Fri Feb 20/21
 | [http://web.mit.edu/be/people/runstadler.shtml JR]
-| [[User:Christopher Bandoro| Chris]]
+| [http://openwetware.org/wiki/User:Christopher_Bandoro | Chris]
 | [[20.109(S14):DNA cloning (Day4)| DNA cloning]]
 | [[Media: S14M1-JonR_Lecture4_Outline.doc | L4 Notes]]<br>[[Media:M1D4_S14_SKH_final.pdf | T/R Pre-lab]]<br>[[Media:S14_M1D4-ANS.pdf | W/F Pre-Lab]]<br>[[Media:20.109_FIG_CAPTIONS_S14_Marilee.pdf | WAC lecture, figures]]
@@ Line 64: / Line 64: @@
 | Tue/Wed Feb 25/26
 | [http://web.mit.edu/be/people/runstadler.shtml JR]
-| [[User:Christopher Bandoro| Chris]]
+| [http://openwetware.org/wiki/User:Christopher_Bandoro | Chris]
 | [[20.109(S14):DNA sequencing (Day5)| DNA sequencing]]
 |<font color=green>lab quiz</font color><br>[[Media:S14_M1D5-Lecture.pptx.pdf | Lecture]]<br>[[Media:Module1_Lecture5_LectureOutline.docx | L5 notes]]<br>[[Media:S14_M1D5_AKR_TR_filled.pdf | T/R Pre-lab]]<br>[[Media:S14_M1D5_AKR_WF_filled.pdf | W/F Pre-lab]]
@@ Line 72: / Line 72: @@
 | Thur/Fri Feb 27/28
 | [http://web.mit.edu/be/people/runstadler.shtml JR]
-| [[User:Christopher Bandoro| Chris]]
+| [http://openwetware.org/wiki/User:Christopher_Bandoro | Chris]
 | [[20.109(S14):Journal club I (Day6)| Journal club I]]
 | [[Media:S14_M1D6-Lecture.pptx.pdf | Lecture]]<br>[[Media:Module1_Lecture6_LectureOutline.doc | L6 notes]]
@@ Line 80: / Line 80: @@
 | Tue/Wed Mar 4/5
 | [http://web.mit.edu/be/people/runstadler.shtml JR]
-| [[User:Christopher Bandoro| Chris]]
+| [http://openwetware.org/wiki/User:Christopher_Bandoro | Chris]
 | [[20.109(S14):Phylogenetic and primer analyses (Day7)| Phylogenetic and primer analyses]]
 | [[Media: S14_M1D7-Lecture.pptx.pdf | Lecture]]<br>[[Media:M1D7_S14_SKH_final.pdf|T/R Pre-lab]]<br>[[Media:S14_M1D7-ANS.pdf | W/F Pre-Lab]]
@@ Line 88: / Line 88: @@
 | Thur/Fri Mar 6/7
 |[http://web.mit.edu/be/people/runstadler.shtml JR]
-| [[User:Christopher Bandoro| Chris]]
+| [http://openwetware.org/wiki/User:Christopher_Bandoro | Chris]
 | [[20.109(S14):Journal club II (Day8)| Journal club II]]
 |<font color=green>lab quiz</font color><br>[[Media: S14_M1D8-Lecture-AdditionalSlides.pptx.pdf | Lecture]]<br>[[Media: S14M1-JonR_Lecture7-8_Outline.doc | L7/8 notes]]<br>[[Media:20.109_Abstract_SP14.pdf | WAC lecture, abstracts]]
@@ Line 98: / Line 98: @@
 | Tue/Wed Mar 11/12
 | [http://web.mit.edu/be/people/samson.shtml LS]
-| [[User: Suhani Vora|SV]]
+| [http://openwetware.org/wiki/User:Suhani_Vora |SV]
 | [[20.109(S14):Introduction to cell strains and plating (Day1)| Introduction to cell strains and plating]]
 | [[Media:20109_S14-M2Lec1_LSamson.pdf | Lecture]]<br>[[Media:M2D1_S14_SKH_final.pdf|T/R Prelab]]<br>[[Media:S14_M2D1-ANS.pdf | W/F Pre-Lab]]<br>[[Media:20.109_IMRD_SP14a.pdf | WAC lecture, IMRD]]<br><font color = CC0000><b>Draft Mod 1 Abstract and Summary Due WED 1 PM</b></font color><br>
@@ Line 106: / Line 106: @@
 | Thur/Fri Mar 13/14
 | [http://web.mit.edu/be/people/samson.shtml LS]
-| [[User: Suhani Vora|SV]]
+| [http://openwetware.org/wiki/User:Suhani_Vora |SV]
 | [[20.109(S14):Begin Western protein analysis (Day2)| Begin Western protein analysis]]
 |[[Media:20109_S14-M2Lec2_LSamson.pdf | Lecture]]<br>[[Media:M2D2_S14_SKH_final.pdf|T/R Prelab]]<br>[[Media:S14_M2D2-ANS.pdf | W/F Pre-Lab]]
@@ Line 114: / Line 114: @@
 | Tue/Wed Mar 18/19
 | [http://web.mit.edu/be/people/samson.shtml LS]
-| [[User: Suhani Vora|SV]]
+| [http://openwetware.org/wiki/User:Suhani_Vora |SV]
 | [[20.109(S14): Choose system conditions and paper discussion (Day3)| Choose system conditions and paper discussion]]
 |<br><font color = CC0000><b>Mod 1 Memo Due</b></font color><br><font color=green>lab quiz</font color><br>[[Media:20109_S14-M2Lec3_LSamson.pdf | Lecture]]<br>[[Media:M2D3_S14_SKH_final.pdf | T/R Pre-Lab]]<br>[[Media:S14_M2D3-ANS.pdf | W/F Pre-Lab]]
@@ Line 122: / Line 122: @@
 | Thur/Fri Mar 20/21
 | [http://web.mit.edu/be/people/samson.shtml LS]
-| [[User: Suhani Vora|SV]]
+| [http://openwetware.org/wiki/User:Suhani_Vora |SV]
 | [[20.109(S14):Complete Western and prepare damaged DNA (Day4)| Complete Western and prepare damaged DNA]]
 | [[Media:20109_S14-M2Lec4_LSamson.pdf | Lecture]]<br>[[Media:M2D4_S14_SKH_final.pdf| T/R Pre-lab]]<br>[[Media:S14_M2D4-ANS.pdf | W/F Pre-Lab]]
@@ Line 135: / Line 135: @@
 | Tue/Wed Apr 1/2
 | [http://web.mit.edu/be/people/samson.shtml LS]
-| [[User: Suhani Vora|SV]]
+| [http://openwetware.org/wiki/User:Suhani_Vora |SV]
 | [[20.109(S14):Cell preparation for DNA repair assays (Day5)| Cell preparation for DNA repair assays]]
 |<font color=green>lab quiz</font color><br>[[Media:20109_S14-M2Lec5_LSamson.pdf | Lecture]]<br>[[Media:M2D5_S14_SKH_final.pdf|T/R Pre-Lab]]<br>[[Media:S14_M2D5-ANS.pdf | W/F Pre-Lab]]
@@ Line 143: / Line 143: @@
 | Thur/Fri Apr 3/4
 | [http://web.mit.edu/be/people/samson.shtml LS]
-| [[User: Suhani Vora|SV]]
+| [http://openwetware.org/wiki/User:Suhani_Vora |SV]
 | [[20.109(S14):DNA repair assays(Day6)| DNA repair assays]]
 |[[Media:20109_S14-M2Lec6_LSamson.pdf | Lecture]]<br>[[Media:M2D6_S14_SKH_final.pdf|T/R Pre-Lab]]<br>[[Media:S14_M2D6-ANS.pdf | W/F Pre-Lab]]<br><font color = CC0000><b>Final Mod 1 Abstract and Summary Due</b></font color><br>
@@ Line 151: / Line 151: @@
 | Tue/Wed Apr 8/9
 | [http://web.mit.edu/be/people/samson.shtml LS]
-| [[User: Suhani Vora|SV]]
+| [http://openwetware.org/wiki/User:Suhani_Vora |SV]
 | [[20.109(S14):Data analysis (Day7)| Data analysis]]
-|<font color=green>lab quiz</font color>
+|<font color=green>lab quiz</font color><br>[[Media:ZDN_Module_Lecture_4-8-14.pdf| Lecture]]<br>[[Media:M2D7_S14_SKH_final.pdf|T/R Pre-Lab]]<br>[[Media:S14_M2D7-ANS.pdf | W/F Pre-Lab]]
 |--
 | 3
 | 1
 | Thur/Fri Apr 10/11
-| [[User:AgiStachowiak | ANS]]
+| [http://openwetware.org/wiki/User:AgiStachowiak  | ANS]
-| [[User:Reginald K. Avery|RKA]]
+| [http://openwetware.org/wiki/User:Reginald_K._Avery |RKA]
 | [[20.109(S14):Design experiment (Day1)| Design experiment]]
-|
+| [[Media: 20109_S14-M3Lec1_AStachowiak.pdf | Lecture]]<br>[[Media: M3D1_S14_SKH_final.pdf | T/R Pre-Lab]] <br>[[Media:S14_M3D1-ANS.pdf | W/F Pre-Lab]]
 |--
 | 3
 | 2
 | Tue/Wed Apr 15/16
-| [[User:AgiStachowiak | ANS]]
+| [http://openwetware.org/wiki/User:AgiStachowiak  | ANS]
-| [[User:Reginald K. Avery|RKA]]
+| [http://openwetware.org/wiki/User:Reginald_K._Avery |RKA]
 | [[20.109(S14):Initiate cell culture (Day2)| Initiate cell culture]]
-| <font color=green>lab quiz</font color>
+| <font color=green>lab quiz</font color><br>[[Media: 20109_S14-M3Lec2_AStachowiak.pdf | Lecture]]<br>
 |--
 | 3
 | 3
 | Thur/Fri Apr 17/18
-| [[User:AgiStachowiak | ANS]]
+| [http://openwetware.org/wiki/User:AgiStachowiak  | ANS]
-| [[User:Reginald K. Avery|RKA]]
+| [http://openwetware.org/wiki/User:Reginald_K._Avery |RKA]
 | [[20.109(S14):Testing cell viability (Day3)| Testing cell viability]]
-|
+| [[Media: 20109_S14-M3Lec3_AStachowiak.pdf | Lecture]]<br>
 |--
 |
@@ Line 190: / Line 190: @@
 | 4
 | Thu/Fri Apr 24/25
-| [[User:AgiStachowiak | ANS]]
+| [http://openwetware.org/wiki/User:AgiStachowiak  | ANS]
-| [[User:Reginald K. Avery|RKA]]
+| [http://openwetware.org/wiki/User:Reginald_K._Avery |RKA]
 | [[20.109(S14):Preparing cells for analysis (Day4)| Preparing cells for analysis]]
-| <font color=green>lab quiz</font color>
+| <font color=green>lab quiz</font color><br>[[Media: 20109_S14-M3Lec4_AStachowiak.pdf | Lecture]]<br>[[Media:M3D4_S14_SKH_final.pdf|T/R Pre-Lab]]<br>[[Media:S14_M3D4-ANS.pdf | W/F Pre-Lab]]
 |--
 |
@@ Line 206: / Line 206: @@
 | 5
 | Thur/Fri May 1/2
-| [[User:AgiStachowiak | ANS]]
+| [http://openwetware.org/wiki/User:AgiStachowiak  | ANS]
-| [[User:Reginald K. Avery|RKA]]
+| [http://openwetware.org/wiki/User:Reginald_K._Avery |RKA]
 | [[20.109(S14):Initiating transcript and protein assays (Day5)| Initiating transcript and protein assays]]
-|
+| [[Media: 20109_S14-M3Lec5_AStachowiak.pdf | Lecture]]<br>[[Media:M3D5_S14_SKH_final.pdf|T/R Pre-Lab]]<br>[[Media:S14_M3D5-ANS.pdf | W/F Pre-Lab]]
 |--
 | 3
 | 6
 | Tue/Wed May 6/7
-| [[User:AgiStachowiak | ANS]]
+| [http://openwetware.org/wiki/User:AgiStachowiak  | ANS]
-| [[User:Reginald K. Avery|RKA]]
+| [http://openwetware.org/wiki/User:Reginald_K._Avery |RKA]
 | [[20.109(S14):Transcript-level analysis (Day6)| Transcript-level analysis]]
-| <font color=green>lab quiz</font color>
+| <font color=green>lab quiz</font color><br>[[Media: 20109_S14-M3Lec6_AStachowiak.pdf | Lecture]]<br>[[Media:S14_M3D6-ANS-TR.pdf|T/R Pre-Lab]]<br>[[Media:S14_M3D6-ANS.pdf | W/F Pre-Lab]]
 |--
 | 3
 | 7
 | Thur/Fri May 8/9
-| [[User:AgiStachowiak | ANS]]
+| [http://openwetware.org/wiki/User:AgiStachowiak  | ANS]
-| [[User:Reginald K. Avery|RKA]]
+| [http://openwetware.org/wiki/User:Reginald_K._Avery |RKA]
 | [[20.109(S14):Protein-level and wrap-up analysis (Day7)| Protein-level and wrap-up analysis]]
-| <br><font color = CC0000><b>Mod 3 Mini-report Due</b></font color><br>
+| <br><font color = CC0000><b>Mod 3 Mini-report Due</b></font color><br>[[Media:M3D7_S14_SKH_final.pdf|T/R Pre-Lab]]<br>[[Media:S14_M3D7-ANS.pdf | W/F Pre-Lab]]
 |--
 | 3
 | 8
 | Tue/Wed May 13/14
-| [[User:AgiStachowiak | ANS]]
+| [http://openwetware.org/wiki/User:AgiStachowiak  | ANS]
-| [[User:Reginald K. Avery|RKA]]
+| [http://openwetware.org/wiki/User:Reginald_K._Avery |RKA]
 | [[20.109(S14):Student presentations (Day8)| Student presentations]]
 |
@@ Line 242: / Line 242: @@
 |
 |
-| No lab session. Meet in '''TBD''' from 11am-1pm: feedback/discussion about class, then celebratory lunch etc.
+| No lab session. Meet in '''16-220''' from 11am-1pm: feedback/discussion about class, then celebratory lunch etc.
 |
 |}
 </center>
 <br style="clear:both;"/>

Difference between revisions of "20.109(S14): Spring 2014 schedule"

Latest revision as of 13:58, 29 July 2015

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