Difference between revisions of "20.309 Main Page"
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* [[Calculating MSD and Diffusion Coefficients]] | * [[Calculating MSD and Diffusion Coefficients]] | ||
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− | | <font color=#04B45F> | + | | <font color=#04B45F>3/21/19</font color> |
− | | Exam 1 (at 7:30pm | + | | Exam 1 (at 7:30pm) |
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|style="width: 45%;"|'''Useful resources''' | |style="width: 45%;"|'''Useful resources''' | ||
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− | | <font color=#04B45F> | + | | <font color=#04B45F>4/7/19</font color> |
| Assignment 6 | | Assignment 6 | ||
| [[Electronics boot camp I: passive circuits and transfer functions|Assignment 6 overview]] | | [[Electronics boot camp I: passive circuits and transfer functions|Assignment 6 overview]] | ||
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* [[Input and output impedance]] | * [[Input and output impedance]] | ||
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− | | <font color=#04B45F> | + | | <font color=#04B45F>4/14/19</font color> |
| Assignment 7 | | Assignment 7 | ||
| [[Electronics bootcamp II: feedback systems]] | | [[Electronics bootcamp II: feedback systems]] | ||
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* [[Input and output impedance]] | * [[Input and output impedance]] | ||
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− | | <font color=#04B45F> | + | | <font color=#04B45F>4/19/19</font color> |
| Quiz 2 (in lecture) | | Quiz 2 (in lecture) | ||
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− | | <font color=#04B45F> | + | | <font color=#04B45F>4/21/19</font color> |
| Assignment 8 | | Assignment 8 | ||
| [[Assignment 8 Overview: flow channel & two-color microscope]] | | [[Assignment 8 Overview: flow channel & two-color microscope]] | ||
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|[http://science.sciencemag.org/content/319/5862/482 *The* yeast paper: Mettelal ''et al.'', ''Science'' (2008)] | |[http://science.sciencemag.org/content/319/5862/482 *The* yeast paper: Mettelal ''et al.'', ''Science'' (2008)] | ||
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− | | <font color=#04B45F> | + | | <font color=#04B45F>4/28/19</font color> |
| Assignment 9 | | Assignment 9 | ||
| [[Assignment 9 Overview: Analyzing yeast images]] | | [[Assignment 9 Overview: Analyzing yeast images]] | ||
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− | | <font color=#04B45F> | + | | <font color=#04B45F>5/5/19</font color> |
| Assignment 10 | | Assignment 10 | ||
| [[Assignment 10, Part 1: Measuring the osmotic shock response of yeast]] | | [[Assignment 10, Part 1: Measuring the osmotic shock response of yeast]] | ||
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− | | <font color=#04B45F> | + | | <font color=#04B45F>5/9/19</font color> |
− | | Exam 2 (at 7:30pm | + | | Exam 2 (at 7:30pm) |
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− | | <font color=#04B45F> | + | | <font color=#04B45F>5/16/19</font color> |
| Assignment 11 | | Assignment 11 | ||
| [[Assignment 11: Tell us about your lab visit]] | | [[Assignment 11: Tell us about your lab visit]] |
Revision as of 23:18, 4 January 2019
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20.309 course information
- 20.309 course information
- lab safety
- Reserve a lab station here: Bioinstrumentation Lab reservation system
20.309 master schedule
Module 1: Optics & Microscopy
Important dates | Assignment due | Assignment page links | Useful resources |
2/17/19 | Assignment 1 |
| |
2/24/19 | Assignment 2 | Assignment 2 Overview | |
2/28/19 | Quiz 1 (in lecture) | ||
3/3/19 | Assignment 3 | Assignment 3 Overview | |
3/10/19 | Assignment 4 | ||
3/17/19 | Assignment 5 | Assignment 5 Overview | |
3/21/19 | Exam 1 (at 7:30pm) |
Module 2: electronics, signals and systems
Important dates | Assignment due | Assignment page links | Useful resources |
4/7/19 | Assignment 6 | Assignment 6 overview | |
4/14/19 | Assignment 7 | Electronics bootcamp II: feedback systems | |
4/19/19 | Quiz 2 (in lecture) | ||
4/21/19 | Assignment 8 | Assignment 8 Overview: flow channel & two-color microscope | *The* yeast paper: Mettelal et al., Science (2008) |
4/28/19 | Assignment 9 | Assignment 9 Overview: Analyzing yeast images | |
5/5/19 | Assignment 10 | Assignment 10, Part 1: Measuring the osmotic shock response of yeast | |
5/9/19 | Exam 2 (at 7:30pm) | ||
5/16/19 | Assignment 11 | Assignment 11: Tell us about your lab visit |
Optics and microscopy resources
Background reading
- Geometrical optics and ray tracing
- Physical optics and resolution
- Optical aberrations
- Aperture and field stops
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Code examples and simulations
- Converting Gaussian fit to Rayleigh resolution
- MATLAB: Estimating resolution from a PSF slide image
- Matlab: Scalebars
- Calculating MSD and Diffusion Coefficients
Electronics resources
Background reading
- Electronics primer
- Khan Academy Material, esp. "Ideal Circuit Elements" and "Voltage Divider"
- Real electronics
- Impedance analysis
- Transfer functions and Bode plots
- Complex number review
- Input and output impedance
Code examples and simulations
- DNA Melting: Simulating DNA Melting - Basics
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA Melting: Model function and parameter estimation by nonlinear regression
Reference materials
Limits of detection mini-lab
- Lab Manual: Limits of Detection
- Lab Manual: Atomic Force Microscopy (AFM)
- Limits of Detection: Data Sessions