Difference between revisions of "20.309 Main Page"

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__NOTOC__
 
Bioinstrumentation scholars: you are welcome to edit and improve this course wiki. Correct, helpful, exquisitely-expressed changes will increase your class participation grade. Alterations not meeting those critera may have the opposite effect.
 
Bioinstrumentation scholars: you are welcome to edit and improve this course wiki. Correct, helpful, exquisitely-expressed changes will increase your class participation grade. Alterations not meeting those critera may have the opposite effect.
  
 
If you would like to contribute to this site, please [[Special:RequestAccount|request an account]].
 
If you would like to contribute to this site, please [[Special:RequestAccount|request an account]].
  
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== 20.309 course information==
  
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* [[20.309:Course Information]]
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* [[20.309:Safety]]
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* Reserve a lab station here: [http://measurebiology.org/reservations/Web/schedule.php Bioinstrumentation Lab reservation system]
  
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== 20.309 Master Schedule==
 
== 20.309 Master Schedule==
  
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===Module 1: Optics & Microscopy===
 
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|style="width: 10%;"|'''Important dates'''  
 
|style="width: 10%;"|'''Important dates'''  
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|  <font color=#04B45F>10/19/17</font color>
 
|  <font color=#04B45F>10/19/17</font color>
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| Exam 1 (at 7:30pm in room ____)
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| Exam 1 (at 7:30pm in 4-163)
 
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===Module 2: Signals and Systems===
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{| border=1px
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|style="width: 10%;"|'''Important dates'''
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|style="width: 15%;"|'''Assignment due'''
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|style="width: 30%;"|'''Assignment page links'''
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|style="width: 45%;"|'''Useful resources'''
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|--
 
|  <font color=#04B45F>10/29/17</font color>
 
|  <font color=#04B45F>10/29/17</font color>
 
| Assignment 6
 
| Assignment 6
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|  <font color=#04B45F>12/7/17</font color>
 
|  <font color=#04B45F>12/7/17</font color>
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| Exam 2 (at 7:30pm in room _____)
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| Exam 2 (at 7:30pm in 4-163)
 
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__TOC__
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==Optics and microscopy resources==
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== 20.309 course information==
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* [[20.309:Course Information]]
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* [[20.309:Lab Report Guidelines]]
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* [[20.309:Safety]]
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Reserve a lab station here: [http://measurebiology.org/reservations/Web/schedule.php Bioinstrumentation Lab reservation system]
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==Optics bootcamp==
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===Lab manual===
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* [[Optics Bootcamp]]
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===Background reading===
 
===Background reading===
 
* [[Geometrical optics and ray tracing]]
 
* [[Geometrical optics and ray tracing]]
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* [[Physical optics and resolution]]
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* [[Optical aberrations]]
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* [[Aperture and field stops]]
 
* [[Optical detectors, noise, and the limit of detection]]
 
* [[Optical detectors, noise, and the limit of detection]]
 
* [[Manta G032 camera measurements]]
 
* [[Manta G032 camera measurements]]
 
* [[Understanding log plots]]
 
* [[Understanding log plots]]
  
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{{:Optical microscopy lab wiki pages}}
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===Code examples and simulations===
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* [[Converting Gaussian fit to Rayleigh resolution]]
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==Electronics bootcamp==
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* [[MATLAB: Estimating resolution from a PSF slide image]]
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===Lab manual===
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* [[Matlab: Scalebars]]
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* [[Electronics Mini-Lab|Electronics bootcamp]]
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* [[Calculating MSD and Diffusion Coefficients]]
  
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==Electronics resources==
 
===Background reading===
 
===Background reading===
 
* [[Electronics primer]]
 
* [[Electronics primer]]
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* [[Input and output impedance]]
 
* [[Input and output impedance]]
  
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{{:DNA melting lab wiki pages}}
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===Code examples and simulations===
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* [[DNA Melting: Simulating DNA Melting - Basics]]
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* [[DNA Melting: Simulating DNA Melting - Intermediate Topics]]
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* [[DNA Melting: Model function and parameter estimation by nonlinear regression]]
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===Reference materials===
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* [[DNA Melting Thermodynamics]]
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* [[DNA Melting: DNA Sequences]]
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* [http://mfold.rna.albany.edu/?q=DINAMelt/Hybrid2 DINAMelt Web Server]
  
 
==Limits of detection mini-lab==
 
==Limits of detection mini-lab==

Revision as of 13:38, 5 September 2017

20.309: Biological Instrumentation and Measurement

ImageBar 774.jpg


Bioinstrumentation scholars: you are welcome to edit and improve this course wiki. Correct, helpful, exquisitely-expressed changes will increase your class participation grade. Alterations not meeting those critera may have the opposite effect.

If you would like to contribute to this site, please request an account.

20.309 course information


20.309 Master Schedule

Module 1: Optics & Microscopy

Important dates Assignment due Assignment page links Useful resources
9/17/17 Assignment 1

Assignment 1 Overview

9/24/17 Assignment 2 Assignment 2 Overview
9/28/17 Quiz 1 (in lecture)
10/1/17 Assignment 3 Assignment 3 Overview
10/8/17 Assignment 4
10/15/17 Assignment 5 Assignment 5 Overview
10/19/17 Exam 1 (at 7:30pm in 4-163)



Module 2: Signals and Systems

Important dates Assignment due Assignment page links Useful resources
10/29/17 Assignment 6 Assignment 6 Overview
11/2/17 Quiz 2 (in lecture)
11/5/17 Assignment 7 Assignment 7 Overview
11/12/17 Assignment 8 Assignment 8 Overview
11/19/17 Assignment 9 Assignment 9 Overview
12/3/17 Assignment 10
12/7/17 Exam 2 (at 7:30pm in 4-163)
12/13/17 Assignment 11


Optics and microscopy resources

Background reading

Code examples and simulations

Electronics resources

Background reading

Code examples and simulations

Reference materials

Limits of detection mini-lab

MRI mini-lab

(Kept for historical reasons.)
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