Difference between revisions of "20.309 Main Page"
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MAXINE JONAS (Talk | contribs) (→Module 1: Optics & Microscopy) |
MAXINE JONAS (Talk | contribs) (→Module 2: electronics, signals and systems) |
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|style="width: 45%;"|'''Useful resources''' | |style="width: 45%;"|'''Useful resources''' | ||
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− | | <font color=#04B45F>4/ | + | | <font color=#04B45F>4/13/20</font color> |
| Assignment 6 | | Assignment 6 | ||
| [[Assignment 6 Overview: two color microscope|Assignment 6 overview]] | | [[Assignment 6 Overview: two color microscope|Assignment 6 overview]] | ||
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* [[Input and output impedance]] | * [[Input and output impedance]] | ||
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| Assignment 7 | | Assignment 7 | ||
| [[Electronics boot camp I: passive circuits and transfer functions|Assignment 7 overview]] | | [[Electronics boot camp I: passive circuits and transfer functions|Assignment 7 overview]] | ||
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* [[Input and output impedance]] | * [[Input and output impedance]] | ||
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− | | <font color=#04B45F>4/ | + | | <font color=#04B45F>4/21/20</font color> |
+ | | Quiz 2 (60 min) | ||
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+ | |- | ||
+ | | <font color=#04B45F>4/27/20</font color> | ||
| Assignment 8 | | Assignment 8 | ||
| [[Assignment 8 Overview: flow channel & two-color microscope|Assignment 8 Overview]] | | [[Assignment 8 Overview: flow channel & two-color microscope|Assignment 8 Overview]] | ||
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|[http://science.sciencemag.org/content/319/5862/482 *The* yeast paper: Mettelal ''et al.'', ''Science'' (2008)] | |[http://science.sciencemag.org/content/319/5862/482 *The* yeast paper: Mettelal ''et al.'', ''Science'' (2008)] | ||
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− | | <font color=#04B45F> | + | | <font color=#04B45F>5/4/20</font color> |
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| Assignment 9 | | Assignment 9 | ||
| [[Assignment 9 Overview: Analyzing yeast images]] | | [[Assignment 9 Overview: Analyzing yeast images]] | ||
* [[Assignment 8, Part 0: convolution practice| Part 0: convolution practice]] | * [[Assignment 8, Part 0: convolution practice| Part 0: convolution practice]] | ||
* [[Assignment 9, Part 1: Analyze two-color yeast images| Part 1: Analyze two-color yeast images]] | * [[Assignment 9, Part 1: Analyze two-color yeast images| Part 1: Analyze two-color yeast images]] | ||
+ | * [[Assignment 10, Part 1: Measuring the osmotic shock response of yeast| A10: Measure the osmotic shock response of yeast]] | ||
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| <font color=#04B45F>5/3/20</font color> | | <font color=#04B45F>5/3/20</font color> | ||
− | | Assignment 10 | + | | Assignment 10 |
− | | | + | |(combined with Assignment 9 in Sp20) |
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| <font color=#04B45F>5/7/20</font color> | | <font color=#04B45F>5/7/20</font color> | ||
− | | Exam 2 ( | + | | Exam 2 (90 min) |
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− | | | + | | cancelled |
| Assignment 11 | | Assignment 11 | ||
| [[Assignment 11: Tell us about your lab visit]] | | [[Assignment 11: Tell us about your lab visit]] |
Revision as of 13:14, 25 March 2020
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20.309 course information
- 20.309 course information
- lab safety
- Reserve a lab station here: Bioinstrumentation Lab reservation system
20.309 master schedule
Module 1: Optics & Microscopy
Important dates | Assignment due | Assignment page links | Useful resources |
2/16/20 | Assignment 1 | ||
2/23/20 | Assignment 2 | Assignment 2 Overview | |
2/25/20 | Quiz 1 (in lecture) | ||
3/1/20 | Assignment 3 | Assignment 3 Overview | |
3/8/20 | Assignment 4 | ||
4/3/20 | Assignment 5 | Assignment 5 Overview (Spring 2020) | |
4/7/20 | Exam 1 |
Module 2: electronics, signals and systems
Important dates | Assignment due | Assignment page links | Useful resources |
4/13/20 | Assignment 6 | Assignment 6 overview | |
4/20/20 | Assignment 7 | Assignment 7 overview | |
4/21/20 | Quiz 2 (60 min) | ||
4/27/20 | Assignment 8 | Assignment 8 Overview | *The* yeast paper: Mettelal et al., Science (2008) |
5/4/20 | Assignment 9 | Assignment 9 Overview: Analyzing yeast images | |
5/3/20 | Assignment 10 | (combined with Assignment 9 in Sp20) | |
5/7/20 | Exam 2 (90 min) | ||
cancelled | Assignment 11 | Assignment 11: Tell us about your lab visit |
Optics and microscopy resources
Background reading
- Geometrical optics and ray tracing
- Physical optics and resolution
- Optical aberrations
- Aperture and field stops
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Code examples and simulations
- Converting Gaussian fit to Rayleigh resolution
- MATLAB: Estimating resolution from a PSF slide image
- Matlab: Scalebars
- Calculating MSD and Diffusion Coefficients
Electronics resources
Background reading
- Electronics primer
- Khan Academy Material, esp. "Ideal Circuit Elements" and "Voltage Divider"
- Impedance analysis
- Transfer functions and Bode plots
- Complex number review
- Input and output impedance
Limits of detection mini-lab
- Lab Manual: Limits of Detection
- Lab Manual: Atomic Force Microscopy (AFM)
- Limits of Detection: Data Sessions