Difference between revisions of "20.309 Main Page"
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|style="width: 35%;"|'''Resources''' | |style="width: 35%;"|'''Resources''' | ||
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| − | | Week | + | | Week 14: Dec. 4-10 |
| − | | | + | | Finish DNA Melting Part 2, Study for Exam 2 |
| − | | <font color=#04B45F> Tuesday | + | | <font color=#04B45F> Tuesday Dec. 6th: DNA Melting Part 2 |
| + | Thursday Dec. 8th: Exam 2 (At 7:30pm in 4-163) </font color> | ||
| [[DNA Melting Part 2: Lock-in Amplifier and Temperature Control]] | | [[DNA Melting Part 2: Lock-in Amplifier and Temperature Control]] | ||
[[DNA Melting Report Requirements for Part 2]] | [[DNA Melting Report Requirements for Part 2]] | ||
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<!-- * [[Real electronics]] -->| | <!-- * [[Real electronics]] -->| | ||
|-- | |-- | ||
| − | | Week | + | | Week 15: Dec. 11-17 |
| − | | | + | | Attend a Measuring Biological Forces demo (TBA) and eat cupcakes! |
| − | | <font color=#04B45F> Tuesday Dec. | + | | <font color=#04B45F> Tuesday, Dec. 13: Cupcakes! </font color> |
| − | + | | | |
| − | | [[ | + | | Limits of detection mini-lab |
| − | [[ | + | * [[Lab Manual: Limits of Detection]] |
| − | + | * [[Lab Manual: Atomic Force Microscopy (AFM)]] | |
| + | * [[Limits of Detection: Data Sessions]] | ||
|} | |} | ||
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20.309 This week and next in the 20.309 lab
| Week | Summary | Assignments due | Lab Manual | Resources | |
| Week 14: Dec. 4-10 | Finish DNA Melting Part 2, Study for Exam 2 | Tuesday Dec. 6th: DNA Melting Part 2
Thursday Dec. 8th: Exam 2 (At 7:30pm in 4-163) |
DNA Melting Part 2: Lock-in Amplifier and Temperature Control | Overview
Code examples and simulations
Reference materials
Background reading |
|
| Week 15: Dec. 11-17 | Attend a Measuring Biological Forces demo (TBA) and eat cupcakes! | Tuesday, Dec. 13: Cupcakes! | Limits of detection mini-lab |
Contents
20.309 course information
Reserve a lab station here: Bioinstrumentation Lab reservation system
Optics bootcamp
Lab manual
Background reading
- Geometrical optics and ray tracing
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
Optical microscopy lab
Code examples and simulations
- Converting Gaussian fit to Rayleigh resolution
- MATLAB: Estimating resolution from a PSF slide image
- Matlab: Scalebars
- Calculating MSD and Diffusion Coefficients
Background reading
- Geometrical optics and ray tracing
- Physical optics and resolution
- Optical aberrations
- Aperture and field stops
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Electronics bootcamp
Lab manual
Background reading
- Electronics primer
- Khan Academy Material, esp. "Ideal Circuit Elements" and "Voltage Divider"
- Real electronics
- Impedance analysis
- Transfer functions and Bode plots
- Complex number review
- Input and output impedance
DNA melting lab
Lab manuals
- Lab Manual:Measuring DNA Melting Curves
- DNA Melting Part 1: Measuring Temperature and Fluorescence
- DNA Melting Report Requirements for Part 1
- DNA Melting: Model function and parameter estimation by nonlinear regression
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA melting: Identifying the unknown sample
- DNA Melting Part 2: Lock-in Amplifier and Temperature Control
- DNA Melting Report Requirements for Part 2
Code examples and simulations
- DNA Melting: Simulating DNA Melting - Basics
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA Melting: Model function and parameter estimation by nonlinear regression
Reference materials
Background reading
Limits of detection mini-lab
- Lab Manual: Limits of Detection
- Lab Manual: Atomic Force Microscopy (AFM)
- Limits of Detection: Data Sessions
