Difference between revisions of "20.309 Main Page"
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|style="width: 35%;"|'''Resources''' | |style="width: 35%;"|'''Resources''' | ||
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| − | | rowspan="2"| Week | + | | rowspan="2"| Week 3: Sept. 18 - 24 |
| − | | rowspan="2"|Finish | + | | rowspan="2"|Finish Microscopy 1, start PSet1 and Microscopy 2 |
| − | | rowspan="2"|<font color=#04B45F>Wednesday | + | | rowspan="2"|<font color=#04B45F>Wednesday Sept. 21: Microscopy 1 </font color> |
| − | + | | [[Optical Microscopy Part 1: Brightfield Microscopy|Microscopy 1]] continued (Sun-Wed) | |
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| − | | [[Optical Microscopy Part 1: Brightfield Microscopy|Microscopy 1]] ( | + | |
| Overview | | Overview | ||
* [[Lab Manual: Optical Microscopy]] | * [[Lab Manual: Optical Microscopy]] | ||
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* [[Optical detectors, noise, and the limit of detection]] | * [[Optical detectors, noise, and the limit of detection]] | ||
* [[Manta G032 camera measurements]] | * [[Manta G032 camera measurements]] | ||
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| [[Optical Microscopy Part 2: Fluorescence Microscopy|Microscopy 2]] (Wed-Fri) | | [[Optical Microscopy Part 2: Fluorescence Microscopy|Microscopy 2]] (Wed-Fri) | ||
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| + | |-- | ||
| + | | Week 4: Sept. 25 - Oct. 1 | ||
| + | | Hand in PSet 1 and continue working on Microscopy 2 | ||
| + | | <font color=#04B45F> | ||
| + | *Tuesday Sept. 27: PSet 1 | ||
| + | *Friday Sept. 30: Quiz 1 (in class)</font color> | ||
| + | | [[Optical Microscopy Part 2: Fluorescence Microscopy|Microscopy 2]] (Wed-Fri) | ||
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Revision as of 14:19, 19 September 2016
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20.309 This week and next in the 20.309 lab
| Week | Summary | Assignments due | Lab Manual | Resources |
| Week 3: Sept. 18 - 24 | Finish Microscopy 1, start PSet1 and Microscopy 2 | Wednesday Sept. 21: Microscopy 1 | Microscopy 1 continued (Sun-Wed) | Overview
Code examples and simulations
Background reading |
| Microscopy 2 (Wed-Fri) | ||||
| Week 4: Sept. 25 - Oct. 1 | Hand in PSet 1 and continue working on Microscopy 2 |
|
Microscopy 2 (Wed-Fri) |
Contents
20.309 course information
Reserve a lab station here: Bioinstrumentation Lab reservation system
Optics bootcamp
Lab manual
Background reading
- Geometrical optics and ray tracing
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
Optical microscopy lab
Code examples and simulations
- Converting Gaussian fit to Rayleigh resolution
- MATLAB: Estimating resolution from a PSF slide image
- Matlab: Scalebars
- Calculating MSD and Diffusion Coefficients
Background reading
- Geometrical optics and ray tracing
- Physical optics and resolution
- Optical aberrations
- Aperture and field stops
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Electronics bootcamp
Lab manual
Background reading
- Electronics primer
- Khan Academy Material, esp. "Ideal Circuit Elements" and "Voltage Divider"
- Real electronics
- Impedance analysis
- Transfer functions and Bode plots
- Complex number review
- Input and output impedance
DNA melting lab
Lab manuals
- Lab Manual:Measuring DNA Melting Curves
- DNA Melting Part 1: Measuring Temperature and Fluorescence
- DNA Melting Report Requirements for Part 1
- DNA Melting: Model function and parameter estimation by nonlinear regression
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA melting: Identifying the unknown sample
- DNA Melting Part 2: Lock-in Amplifier and Temperature Control
- DNA Melting Report Requirements for Part 2
Code examples and simulations
- DNA Melting: Simulating DNA Melting - Basics
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA Melting: Model function and parameter estimation by nonlinear regression
Reference materials
Background reading
Limits of detection mini-lab
- Lab Manual: Limits of Detection
- Lab Manual: Atomic Force Microscopy (AFM)
- Limits of Detection: Data Sessions
