Difference between revisions of "20.309 Main Page"
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If you would like to contribute to this site, please [[Special:RequestAccount|request an account]]. | If you would like to contribute to this site, please [[Special:RequestAccount|request an account]]. | ||
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| + | <div style="padding: 10px; width: 740px; border: 5px solid #000FFF;"> | ||
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| + | ==This week and next in the 20.309 lab== | ||
| + | {| border=1px | ||
| + | |style="width: 17%;"|'''Week''' | ||
| + | |style="width: 17%;"|'''Summary''' | ||
| + | |style="width: 16%;"|'''Assignments due''' | ||
| + | |style="width: 17%;"|'''Lab''' | ||
| + | |style="width: 35%;"|'''Resources''' | ||
| + | |-- | ||
| + | | Week 1: Sept. 8 - 11 | ||
| + | | Get started in the lab with the Optics Bootcamp! | ||
| + | | | ||
| + | | [[Optics Bootcamp]] | ||
| + | | | ||
| + | * [[Geometrical optics and ray tracing]] | ||
| + | * [[Optical detectors, noise, and the limit of detection]] | ||
| + | * [[Manta G032 camera measurements]] | ||
| + | |-- | ||
| + | | rowspan="2"| Week 2: Sept. 12 - 18 | ||
| + | | rowspan="2"|Finish the Optics Bootcamp and start Microscopy 1 | ||
| + | | rowspan="2"|<font color=#04B45F>'''Sept. 14 (Wed): Optics Bootcamp'''</font color> | ||
| + | | [[Optics Bootcamp]] continued (Mon-Tues) | ||
| + | | | ||
| + | |- | ||
| + | | [[Optical Microscopy Part 1: Brightfield Microscopy|Microscopy 1]] (Wed-Sun) | ||
| + | | Overview | ||
| + | * [[Lab Manual: Optical Microscopy|Optical Microscopy Overview]] | ||
| + | Code examples and simulations | ||
| + | * [[Converting Gaussian fit to Rayleigh resolution]] | ||
| + | * [[MATLAB: Estimating resolution from a PSF slide image]] | ||
| + | * [[Matlab: Scalebars]] | ||
| + | Background reading | ||
| + | * [[Geometrical optics and ray tracing]] | ||
| + | * [[Physical optics and resolution]] | ||
| + | * [[Optical aberrations]] | ||
| + | * [[Aperture and field stops]] | ||
| + | * [[Optical detectors, noise, and the limit of detection]] | ||
| + | * [[Manta G032 camera measurements]] | ||
| + | |||
| + | |||
| + | |} | ||
| + | </div> | ||
| + | |||
| + | __TOC__ | ||
== 20.309 course information== | == 20.309 course information== | ||
Revision as of 21:56, 1 September 2016
Bioinstrumentation scholars: you are welcome to edit and improve this course wiki. Correct, helpful, exquisitely-expressed changes will increase your class participation grade. Alterations not meeting those critera may have the opposite effect.
If you would like to contribute to this site, please request an account.
This week and next in the 20.309 lab
| Week | Summary | Assignments due | Lab | Resources |
| Week 1: Sept. 8 - 11 | Get started in the lab with the Optics Bootcamp! | Optics Bootcamp | ||
| Week 2: Sept. 12 - 18 | Finish the Optics Bootcamp and start Microscopy 1 | Sept. 14 (Wed): Optics Bootcamp | Optics Bootcamp continued (Mon-Tues) | |
| Microscopy 1 (Wed-Sun) | Overview
Code examples and simulations
Background reading
|
Contents
20.309 course information
Reserve a lab station here: Bioinstrumentation Lab reservation system
Optics bootcamp
Lab manual
Background reading
- Geometrical optics and ray tracing
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
Optical microscopy lab
Code examples and simulations
- Converting Gaussian fit to Rayleigh resolution
- MATLAB: Estimating resolution from a PSF slide image
- Matlab: Scalebars
- Calculating MSD and Diffusion Coefficients
Background reading
- Geometrical optics and ray tracing
- Physical optics and resolution
- Optical aberrations
- Aperture and field stops
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Electronics bootcamp
Lab manual
Background reading
- Electronics primer
- Khan Academy Material, esp. "Ideal Circuit Elements" and "Voltage Divider"
- Real electronics
- Impedance analysis
- Transfer functions and Bode plots
- Complex number review
- Input and output impedance
DNA melting lab
Lab manuals
- Lab Manual:Measuring DNA Melting Curves
- DNA Melting Part 1: Measuring Temperature and Fluorescence
- DNA Melting Report Requirements for Part 1
- DNA Melting: Model function and parameter estimation by nonlinear regression
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA melting: Identifying the unknown sample
- DNA Melting Part 2: Lock-in Amplifier and Temperature Control
- DNA Melting Report Requirements for Part 2
Code examples and simulations
- DNA Melting: Simulating DNA Melting - Basics
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA Melting: Model function and parameter estimation by nonlinear regression
Reference materials
Background reading
Limits of detection mini-lab
- Lab Manual: Limits of Detection
- Lab Manual: Atomic Force Microscopy (AFM)
- Limits of Detection: Data Sessions
