Difference between revisions of "20.309 Main Page"
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+ | __NOTOC__ | ||
Bioinstrumentation scholars: you are welcome to edit and improve this course wiki. Correct, helpful, exquisitely-expressed changes will increase your class participation grade. Alterations not meeting those critera may have the opposite effect. | Bioinstrumentation scholars: you are welcome to edit and improve this course wiki. Correct, helpful, exquisitely-expressed changes will increase your class participation grade. Alterations not meeting those critera may have the opposite effect. | ||
If you would like to contribute to this site, please [[Special:RequestAccount|request an account]]. | If you would like to contribute to this site, please [[Special:RequestAccount|request an account]]. | ||
+ | == 20.309 course information== | ||
+ | * [[20.309:Course Information]] | ||
+ | * [[20.309:Safety]] | ||
+ | * Reserve a lab station here: [http://measurebiology.org/reservations/Web/schedule.php Bioinstrumentation Lab reservation system] | ||
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== 20.309 Master Schedule== | == 20.309 Master Schedule== | ||
− | + | <div style="padding: 10px; width: 740px; border: 5px solid #000FFF;"> | |
+ | ===Module 1: Optics & Microscopy=== | ||
{| border=1px | {| border=1px | ||
|style="width: 10%;"|'''Important dates''' | |style="width: 10%;"|'''Important dates''' | ||
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| <font color=#04B45F>10/19/17</font color> | | <font color=#04B45F>10/19/17</font color> | ||
− | | Exam 1 (at 7:30pm in | + | | Exam 1 (at 7:30pm in 4-163) |
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+ | |} | ||
+ | </div> | ||
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+ | <br> | ||
+ | <div style="padding: 10px; width: 740px; border: 5px solid #000FFF;"> | ||
+ | ===Module 2: Signals and Systems=== | ||
+ | {| border=1px | ||
+ | |style="width: 10%;"|'''Important dates''' | ||
+ | |style="width: 15%;"|'''Assignment due''' | ||
+ | |style="width: 30%;"|'''Assignment page links''' | ||
+ | |style="width: 45%;"|'''Useful resources''' | ||
+ | |-- | ||
| <font color=#04B45F>10/29/17</font color> | | <font color=#04B45F>10/29/17</font color> | ||
| Assignment 6 | | Assignment 6 | ||
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| <font color=#04B45F>12/7/17</font color> | | <font color=#04B45F>12/7/17</font color> | ||
− | | Exam 2 (at 7:30pm in | + | | Exam 2 (at 7:30pm in 4-163) |
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− | + | ==Optics and microscopy resources== | |
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− | ==Optics | + | |
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===Background reading=== | ===Background reading=== | ||
* [[Geometrical optics and ray tracing]] | * [[Geometrical optics and ray tracing]] | ||
+ | * [[Physical optics and resolution]] | ||
+ | * [[Optical aberrations]] | ||
+ | * [[Aperture and field stops]] | ||
* [[Optical detectors, noise, and the limit of detection]] | * [[Optical detectors, noise, and the limit of detection]] | ||
* [[Manta G032 camera measurements]] | * [[Manta G032 camera measurements]] | ||
* [[Understanding log plots]] | * [[Understanding log plots]] | ||
− | + | ===Code examples and simulations=== | |
− | + | * [[Converting Gaussian fit to Rayleigh resolution]] | |
− | == | + | * [[MATLAB: Estimating resolution from a PSF slide image]] |
− | + | * [[Matlab: Scalebars]] | |
− | * [[ | + | * [[Calculating MSD and Diffusion Coefficients]] |
+ | ==Electronics resources== | ||
===Background reading=== | ===Background reading=== | ||
* [[Electronics primer]] | * [[Electronics primer]] | ||
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* [[Input and output impedance]] | * [[Input and output impedance]] | ||
− | + | ===Code examples and simulations=== | |
+ | * [[DNA Melting: Simulating DNA Melting - Basics]] | ||
+ | * [[DNA Melting: Simulating DNA Melting - Intermediate Topics]] | ||
+ | * [[DNA Melting: Model function and parameter estimation by nonlinear regression]] | ||
+ | |||
+ | ===Reference materials=== | ||
+ | * [[DNA Melting Thermodynamics]] | ||
+ | * [[DNA Melting: DNA Sequences]] | ||
+ | * [http://mfold.rna.albany.edu/?q=DINAMelt/Hybrid2 DINAMelt Web Server] | ||
==Limits of detection mini-lab== | ==Limits of detection mini-lab== |
Revision as of 13:38, 5 September 2017
Bioinstrumentation scholars: you are welcome to edit and improve this course wiki. Correct, helpful, exquisitely-expressed changes will increase your class participation grade. Alterations not meeting those critera may have the opposite effect.
If you would like to contribute to this site, please request an account.
20.309 course information
- 20.309:Course Information
- 20.309:Safety
- Reserve a lab station here: Bioinstrumentation Lab reservation system
20.309 Master Schedule
Module 1: Optics & Microscopy
Important dates | Assignment due | Assignment page links | Useful resources |
9/17/17 | Assignment 1 |
| |
9/24/17 | Assignment 2 | Assignment 2 Overview | |
9/28/17 | Quiz 1 (in lecture) | ||
10/1/17 | Assignment 3 | Assignment 3 Overview | |
10/8/17 | Assignment 4 | ||
10/15/17 | Assignment 5 | Assignment 5 Overview | |
10/19/17 | Exam 1 (at 7:30pm in 4-163) |
Module 2: Signals and Systems
Important dates | Assignment due | Assignment page links | Useful resources |
10/29/17 | Assignment 6 | Assignment 6 Overview | |
11/2/17 | Quiz 2 (in lecture) | ||
11/5/17 | Assignment 7 | Assignment 7 Overview | |
11/12/17 | Assignment 8 | Assignment 8 Overview | |
11/19/17 | Assignment 9 | Assignment 9 Overview | |
12/3/17 | Assignment 10 | ||
12/7/17 | Exam 2 (at 7:30pm in 4-163) | ||
12/13/17 | Assignment 11 |
Optics and microscopy resources
Background reading
- Geometrical optics and ray tracing
- Physical optics and resolution
- Optical aberrations
- Aperture and field stops
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Code examples and simulations
- Converting Gaussian fit to Rayleigh resolution
- MATLAB: Estimating resolution from a PSF slide image
- Matlab: Scalebars
- Calculating MSD and Diffusion Coefficients
Electronics resources
Background reading
- Electronics primer
- Khan Academy Material, esp. "Ideal Circuit Elements" and "Voltage Divider"
- Real electronics
- Impedance analysis
- Transfer functions and Bode plots
- Complex number review
- Input and output impedance
Code examples and simulations
- DNA Melting: Simulating DNA Melting - Basics
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA Melting: Model function and parameter estimation by nonlinear regression
Reference materials
Limits of detection mini-lab
- Lab Manual: Limits of Detection
- Lab Manual: Atomic Force Microscopy (AFM)
- Limits of Detection: Data Sessions