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  1. Assignment 1, Part 3: Building your transillumination microscope‏‎ (4 categories)
  2. Problem Set 1‏‎ (3 categories)
  3. Technical Writing‏‎ (3 categories)
  4. Resource list: Image processing‏‎ (3 categories)
  5. Procedure: Peptide-DNA Tethering Assay‏‎ (3 categories)
  6. DNA Melting: Model function and parameter estimation by nonlinear regression‏‎ (3 categories)
  7. Spring 2012: Jonathan Gootenberg STORM‏‎ (3 categories)
  8. Lab Manual: Limits of Detection‏‎ (3 categories)
  9. Assignment 5, Part 1: viscosity and diffusivity in glycerol-water mixtures‏‎ (3 categories)
  10. Assignment 8 Overview‏‎ (3 categories)
  11. 20.309:Lab Report Guidelines‏‎ (3 categories)
  12. Resource list: Optical trapping‏‎ (3 categories)
  13. Procedure: Diffusion in biological gels‏‎ (3 categories)
  14. Spring 2012: Vincent Lee‏‎ (3 categories)
  15. Spring 2012:Snot‏‎ (3 categories)
  16. 20.345:Key Factors Table‏‎ (3 categories)
  17. Spring 2012: Jonathan Gootenberg FinProject‏‎ (3 categories)
  18. Assignment 2: fluorescence microscopy‏‎ (3 categories)
  19. Assignment 5, Part 2: live cell particle tracking of endocytosed beads‏‎ (3 categories)
  20. Assignment 8, Part 2: lock-in amplifier and temperature control‏‎ (3 categories)
  21. Resource list: DNA melting and PCR‏‎ (3 categories)
  22. Procedure: Particle tracking‏‎ (3 categories)
  23. Spring 2012:PSF lab‏‎ (3 categories)
  24. Spring 2012: Real Time qPCR‏‎ (3 categories)
  25. Spring 2012: Jonathan Gootenberg Lab 2‏‎ (3 categories)
  26. MATLAB: Estimating viscoelastic spectrum using Mason's method‏‎ (3 categories)
  27. Temporary Optics Bootcamp‏‎ (3 categories)
  28. Assignment 2: epi illuminator for fluorescence microscopy‏‎ (3 categories)
  29. Assignment 7 Overview‏‎ (3 categories)
  30. Assignment 8, Part 1: convolution‏‎ (3 categories)
  31. Lab Manual: Atomic Force Microscopy (AFM)‏‎ (3 categories)
  32. Resource list: Image Enhancement‏‎ (3 categories)
  33. Assignment 5, Part 1: MSD difference tracking and microscope stability‏‎ (3 categories)
  34. Assignment 7, Part 2: measure temperature and fluorescence‏‎ (3 categories)
  35. Assignment 9 Overview‏‎ (3 categories)
  36. DNA Melting: Simulating DNA Melting - Intermediate Topics‏‎ (3 categories)
  37. Lab Manual: Measuring DNA Melting Curves‏‎ (3 categories)
  38. ESTORM‏‎ (3 categories)
  39. Spring 2012: Ajoke Jumoke Williams‏‎ (3 categories)
  40. Williams: PSF and Deconvolution Lab 2‏‎ (3 categories)
  41. Assignment 1 Overview: Transillumination microscopy‏‎ (3 categories)
  42. Assignment 5 Overview‏‎ (3 categories)
  43. Lab Manual:Optical Trapping‏‎ (3 categories)
  44. Resource list: Electronics‏‎ (3 categories)
  45. Williams: Optical Trapping Lab 1‏‎ (3 categories)
  46. Converting Gaussian fit to Rayleigh resolution‏‎ (3 categories)
  47. Assignment 10 Overview‏‎ (3 categories)
  48. Assignment 8, Part 0: convolution practice‏‎ (3 categories)
  49. Assignment 1, Part 1: Pre-lab questions‏‎ (3 categories)
  50. Assignment 6, Part 1: Pre-lab questions‏‎ (3 categories)
  51. Assignment 9, Part 2: Simulating DNA melting data and testing the model function‏‎ (3 categories)
  52. Resource list: Magnetic Resonance Imaging‏‎ (3 categories)
  53. Resource list: Suppliers‏‎ (3 categories)
  54. Resource list: Matlab‏‎ (3 categories)
  55. Spring 2012: Jonathan Gootenberg‏‎ (3 categories)
  56. Optics Bootcamp‏‎ (3 categories)
  57. Assignment 2 Part 2: Fluorescence microscopy‏‎ (3 categories)
  58. Assignment 1, Part 2: Optics bootcamp‏‎ (3 categories)
  59. Assignment 3 Overview‏‎ (3 categories)
  60. Assignment 7, Part 3: testing your instrument and measuring a DNA melting curve‏‎ (3 categories)
  61. Lab Manual: Optical Microscopy‏‎ (3 categories)
  62. Resource list: Optics‏‎ (3 categories)
  63. Resource list: Microscopy‏‎ (3 categories)
  64. Spring 2012:Leanna Morinishi‏‎ (3 categories)
  65. A.Williams: Objectives and Literature Review‏‎ (3 categories)
  66. Spring 2012: Jonathan Gootenberg Journal‏‎ (3 categories)
  67. Assignment 2 Part 1: Noise in images‏‎ (3 categories)
  68. Assignment 1, Part 4: Measuring magnification and bead size‏‎ (3 categories)
  69. Assignment 7, Part 1: op amp golden rules questions‏‎ (3 categories)
  70. Final Project Proposal Williams‏‎ (2 categories)
  71. Protocols‏‎ (2 categories)
  72. DNA Melting II: Using the Matlab DNALockIn GUI‏‎ (2 categories)
  73. Cellular microrheology‏‎ (2 categories)
  74. Beam Expander Example‏‎ (2 categories)
  75. SToNCalculator.m‏‎ (2 categories)
  76. Electronics boot camp I: passive circuits and transfer functions‏‎ (2 categories)
  77. Spring 2020 Assignment 9‏‎ (2 categories)
  78. DNA Melting Part 1: Measuring Temperature and Fluorescence‏‎ (2 categories)
  79. DNA Melting Report Requirements for Part 1‏‎ (2 categories)
  80. Optical Microscopy Part 1: Brightfield Microscopy‏‎ (2 categories)
  81. Limits of Detection: Data Sessions‏‎ (2 categories)
  82. Optical Microscopy Part 2: Fluorescence Microscopy‏‎ (2 categories)
  83. MATLAB: Estimating resolution from a PSF slide image‏‎ (2 categories)
  84. Assignment 2 Part 4: Fluorescent imaging of actin‏‎ (2 categories)
  85. Finding and measuring things‏‎ (2 categories)
  86. Electronics boot camp lab part 1‏‎ (2 categories)
  87. 20.309:Course Information‏‎ (2 categories)
  88. Spring 2011:CellFinder‏‎ (2 categories)
  89. Limits of Detection:Report Requirements‏‎ (2 categories)
  90. Spring 2012:LFM Proposal‏‎ (2 categories)
  91. 20.345: Wiki guidelines‏‎ (2 categories)
  92. Assignment 2 Part 3: Build an epi-illuminator for your microscope‏‎ (2 categories)
  93. Flat-field correction‏‎ (2 categories)
  94. Electronics written problems‏‎ (2 categories)
  95. DNA Melting Thermodynamics‏‎ (2 categories)
  96. DNA Melting: Processing DNA Melting Data‏‎ (2 categories)
  97. Status Report Interrogatories (Spring 2012)‏‎ (2 categories)
  98. Optical Microscopy Part 3: Resolution and Stability‏‎ (2 categories)
  99. Geometrical optics and ray tracing‏‎ (2 categories)
  100. DNA Melting: Using the Basic DNAMelter GUI‏‎ (2 categories)
  101. Assignment 4 part 2: Measure resolution‏‎ (2 categories)
  102. Assignment 8 Overview: flow channel & two-color microscope‏‎ (2 categories)
  103. Impedance Analysis‏‎ (2 categories)
  104. Protocols for making microscopy samples‏‎ (2 categories)
  105. 20.309 Assignment 1: Optics bootcamp‏‎ (2 categories)
  106. Assignment 3, Part 1: visualizing actin with fluorescence contrast‏‎ (2 categories)
  107. Resource list: Particle tracking‏‎ (2 categories)
  108. Optical Microscopy Data Sheets‏‎ (2 categories)
  109. Cell Reservations‏‎ (2 categories)
  110. Real electronics‏‎ (2 categories)
  111. DNA Melting: Using the LockIn DNAMelter GUI‏‎ (2 categories)
  112. Assignment 4 part 3: Track microspheres over time‏‎ (2 categories)
  113. Electronics bootcamp II: feedback systems‏‎ (2 categories)
  114. Bode plots‏‎ (2 categories)
  115. Assignment 6 Overview‏‎ (2 categories)
  116. Assignment 9, Part 1: model function‏‎ (2 categories)
  117. 20.345:Course Information‏‎ (2 categories)
  118. DNA Melting: Simulating DNA Melting - Basics‏‎ (2 categories)
  119. Spring 2012:Vincent Lee Journal‏‎ (2 categories)
  120. Spring 2012:LFM Documentation‏‎ (2 categories)
  121. Electronics primer‏‎ (2 categories)
  122. Electronics Mini-Lab‏‎ (2 categories)
  123. Physical optics and resolution‏‎ (2 categories)
  124. Understanding the lock-in amplifier‏‎ (2 categories)
  125. Optical Microscopy Part 3: Resolution, Stability, and Particle Tracking‏‎ (2 categories)
  126. Input and output impedance‏‎ (2 categories)
  127. 20.109(F19):Class data‏‎ (2 categories)
  128. Assignment 4: finding and measuring things‏‎ (2 categories)
  129. Matlab:Matlab Fundamentals‏‎ (2 categories)
  130. DNA Melting Report Requirements‏‎ (2 categories)
  131. Optical Microscopy Part 4: Particle Tracking‏‎ (2 categories)
  132. Shot noise and centroid finding‏‎ (2 categories)
  133. Optical detectors, noise, and the limit of detection‏‎ (2 categories)
  134. Relay Lens Example‏‎ (2 categories)
  135. Assignment 9 Overview: Analyzing yeast images‏‎ (2 categories)
  136. Calculating MSD and Diffusion Coefficients‏‎ (2 categories)
  137. Electronics written problems II‏‎ (2 categories)
  138. Assignment 6, Part 2: Electronics bootcamp‏‎ (2 categories)
  139. Spring 2011:3D PSF lab‏‎ (2 categories)
  140. DNA Melting Part 2: Lock-in Amplifier and Temperature Control‏‎ (2 categories)
  141. Protocols for cell culture‏‎ (2 categories)
  142. Fall 2012: Journal Presentations‏‎ (2 categories)
  143. DNA Melting: Using the Matlab DNAMelter GUI‏‎ (2 categories)
  144. Super resolution microscopy‏‎ (2 categories)
  145. Matlab: Scalebars‏‎ (2 categories)
  146. Compound Microscope Example‏‎ (2 categories)
  147. Assignment 7: Amplifiers and feedback‏‎ (2 categories)
  148. Assignment 9, Part 1: Analyze two-color yeast images‏‎ (2 categories)
  149. Assignment 3, Part 2: experimental design with fluorescence‏‎ (2 categories)

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