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  1. Assignment 1, Part 3: Building your transillumination microscope‏‎ (4 categories)
  2. Spring 2012: Jonathan Gootenberg FinProject‏‎ (3 categories)
  3. 20.309:Lab Report Guidelines‏‎ (3 categories)
  4. Resource list: Optical trapping‏‎ (3 categories)
  5. Procedure: Diffusion in biological gels‏‎ (3 categories)
  6. Spring 2012: Vincent Lee‏‎ (3 categories)
  7. Spring 2012:Snot‏‎ (3 categories)
  8. 20.345:Key Factors Table‏‎ (3 categories)
  9. Assignment 2: fluorescence microscopy‏‎ (3 categories)
  10. Assignment 5, Part 2: live cell particle tracking of endocytosed beads‏‎ (3 categories)
  11. Assignment 8, Part 2: lock-in amplifier and temperature control‏‎ (3 categories)
  12. Spring 2012: Jonathan Gootenberg Lab 2‏‎ (3 categories)
  13. MATLAB: Estimating viscoelastic spectrum using Mason's method‏‎ (3 categories)
  14. Resource list: DNA melting and PCR‏‎ (3 categories)
  15. Procedure: Particle tracking‏‎ (3 categories)
  16. Spring 2012:PSF lab‏‎ (3 categories)
  17. Spring 2012: Real Time qPCR‏‎ (3 categories)
  18. Assignment 2: epi illuminator for fluorescence microscopy‏‎ (3 categories)
  19. Assignment 7 Overview‏‎ (3 categories)
  20. Assignment 8, Part 1: convolution‏‎ (3 categories)
  21. Temporary Optics Bootcamp‏‎ (3 categories)
  22. Lab Manual: Atomic Force Microscopy (AFM)‏‎ (3 categories)
  23. Resource list: Image Enhancement‏‎ (3 categories)
  24. Assignment 7, Part 2: measure temperature and fluorescence‏‎ (3 categories)
  25. Assignment 9 Overview‏‎ (3 categories)
  26. Assignment 5, Part 1: MSD difference tracking and microscope stability‏‎ (3 categories)
  27. DNA Melting: Simulating DNA Melting - Intermediate Topics‏‎ (3 categories)
  28. Lab Manual: Measuring DNA Melting Curves‏‎ (3 categories)
  29. ESTORM‏‎ (3 categories)
  30. Spring 2012: Ajoke Jumoke Williams‏‎ (3 categories)
  31. Williams: PSF and Deconvolution Lab 2‏‎ (3 categories)
  32. Assignment 1 Overview: Transillumination microscopy‏‎ (3 categories)
  33. Assignment 5 Overview‏‎ (3 categories)
  34. Converting Gaussian fit to Rayleigh resolution‏‎ (3 categories)
  35. Lab Manual:Optical Trapping‏‎ (3 categories)
  36. Resource list: Electronics‏‎ (3 categories)
  37. Williams: Optical Trapping Lab 1‏‎ (3 categories)
  38. Assignment 8, Part 0: convolution practice‏‎ (3 categories)
  39. Assignment 1, Part 1: Pre-lab questions‏‎ (3 categories)
  40. Assignment 6, Part 1: Pre-lab questions‏‎ (3 categories)
  41. Assignment 9, Part 2: Simulating DNA melting data and testing the model function‏‎ (3 categories)
  42. Assignment 10 Overview‏‎ (3 categories)
  43. Optics Bootcamp‏‎ (3 categories)
  44. Resource list: Magnetic Resonance Imaging‏‎ (3 categories)
  45. Resource list: Suppliers‏‎ (3 categories)
  46. Resource list: Matlab‏‎ (3 categories)
  47. Spring 2012: Jonathan Gootenberg‏‎ (3 categories)
  48. Assignment 1, Part 2: Optics bootcamp‏‎ (3 categories)
  49. Assignment 3 Overview‏‎ (3 categories)
  50. Assignment 7, Part 3: testing your instrument and measuring a DNA melting curve‏‎ (3 categories)
  51. Assignment 2 Part 2: Fluorescence microscopy‏‎ (3 categories)
  52. Lab Manual: Optical Microscopy‏‎ (3 categories)
  53. Resource list: Optics‏‎ (3 categories)
  54. Resource list: Microscopy‏‎ (3 categories)
  55. Spring 2012:Leanna Morinishi‏‎ (3 categories)
  56. A.Williams: Objectives and Literature Review‏‎ (3 categories)
  57. Spring 2012: Jonathan Gootenberg Journal‏‎ (3 categories)
  58. Assignment 1, Part 4: Measuring magnification and bead size‏‎ (3 categories)
  59. Assignment 7, Part 1: op amp golden rules questions‏‎ (3 categories)
  60. Assignment 2 Part 1: Noise in images‏‎ (3 categories)
  61. Lab Manual: Limits of Detection‏‎ (3 categories)
  62. Problem Set 1‏‎ (3 categories)
  63. Technical Writing‏‎ (3 categories)
  64. Resource list: Image processing‏‎ (3 categories)
  65. Procedure: Peptide-DNA Tethering Assay‏‎ (3 categories)
  66. DNA Melting: Model function and parameter estimation by nonlinear regression‏‎ (3 categories)
  67. Spring 2012: Jonathan Gootenberg STORM‏‎ (3 categories)
  68. Assignment 5, Part 1: viscosity and diffusivity in glycerol-water mixtures‏‎ (3 categories)
  69. Assignment 8 Overview‏‎ (3 categories)
  70. Optical Microscopy Part 1: Brightfield Microscopy‏‎ (2 categories)
  71. Limits of Detection: Data Sessions‏‎ (2 categories)
  72. Optical Microscopy Part 2: Fluorescence Microscopy‏‎ (2 categories)
  73. MATLAB: Estimating resolution from a PSF slide image‏‎ (2 categories)
  74. Spring 2020 Assignment 9‏‎ (2 categories)
  75. DNA Melting Part 1: Measuring Temperature and Fluorescence‏‎ (2 categories)
  76. DNA Melting Report Requirements for Part 1‏‎ (2 categories)
  77. Assignment 2 Part 4: Fluorescent imaging of actin‏‎ (2 categories)
  78. Finding and measuring things‏‎ (2 categories)
  79. Electronics boot camp lab part 1‏‎ (2 categories)
  80. 20.345: Wiki guidelines‏‎ (2 categories)
  81. 20.309:Course Information‏‎ (2 categories)
  82. Spring 2011:CellFinder‏‎ (2 categories)
  83. Limits of Detection:Report Requirements‏‎ (2 categories)
  84. Spring 2012:LFM Proposal‏‎ (2 categories)
  85. Assignment 2 Part 3: Build an epi-illuminator for your microscope‏‎ (2 categories)
  86. Flat-field correction‏‎ (2 categories)
  87. Electronics written problems‏‎ (2 categories)
  88. Optical Microscopy Part 3: Resolution and Stability‏‎ (2 categories)
  89. Geometrical optics and ray tracing‏‎ (2 categories)
  90. DNA Melting: Using the Basic DNAMelter GUI‏‎ (2 categories)
  91. DNA Melting Thermodynamics‏‎ (2 categories)
  92. DNA Melting: Processing DNA Melting Data‏‎ (2 categories)
  93. Status Report Interrogatories (Spring 2012)‏‎ (2 categories)
  94. Assignment 8 Overview: flow channel & two-color microscope‏‎ (2 categories)
  95. Impedance Analysis‏‎ (2 categories)
  96. Protocols for making microscopy samples‏‎ (2 categories)
  97. 20.309 Assignment 1: Optics bootcamp‏‎ (2 categories)
  98. Assignment 3, Part 1: visualizing actin with fluorescence contrast‏‎ (2 categories)
  99. Assignment 4 part 2: Measure resolution‏‎ (2 categories)
  100. Cell Reservations‏‎ (2 categories)
  101. Real electronics‏‎ (2 categories)
  102. DNA Melting: Using the LockIn DNAMelter GUI‏‎ (2 categories)
  103. Resource list: Particle tracking‏‎ (2 categories)
  104. Optical Microscopy Data Sheets‏‎ (2 categories)
  105. Electronics bootcamp II: feedback systems‏‎ (2 categories)
  106. Bode plots‏‎ (2 categories)
  107. Assignment 6 Overview‏‎ (2 categories)
  108. Assignment 9, Part 1: model function‏‎ (2 categories)
  109. Assignment 4 part 3: Track microspheres over time‏‎ (2 categories)
  110. Spring 2012:LFM Documentation‏‎ (2 categories)
  111. Electronics primer‏‎ (2 categories)
  112. Electronics Mini-Lab‏‎ (2 categories)
  113. Physical optics and resolution‏‎ (2 categories)
  114. Understanding the lock-in amplifier‏‎ (2 categories)
  115. 20.345:Course Information‏‎ (2 categories)
  116. DNA Melting: Simulating DNA Melting - Basics‏‎ (2 categories)
  117. Spring 2012:Vincent Lee Journal‏‎ (2 categories)
  118. Input and output impedance‏‎ (2 categories)
  119. 20.109(F19):Class data‏‎ (2 categories)
  120. Assignment 4: finding and measuring things‏‎ (2 categories)
  121. Optical Microscopy Part 3: Resolution, Stability, and Particle Tracking‏‎ (2 categories)
  122. Optical Microscopy Part 4: Particle Tracking‏‎ (2 categories)
  123. Shot noise and centroid finding‏‎ (2 categories)
  124. Optical detectors, noise, and the limit of detection‏‎ (2 categories)
  125. Matlab:Matlab Fundamentals‏‎ (2 categories)
  126. DNA Melting Report Requirements‏‎ (2 categories)
  127. Assignment 9 Overview: Analyzing yeast images‏‎ (2 categories)
  128. Calculating MSD and Diffusion Coefficients‏‎ (2 categories)
  129. Electronics written problems II‏‎ (2 categories)
  130. Assignment 6, Part 2: Electronics bootcamp‏‎ (2 categories)
  131. Relay Lens Example‏‎ (2 categories)
  132. Protocols for cell culture‏‎ (2 categories)
  133. Fall 2012: Journal Presentations‏‎ (2 categories)
  134. DNA Melting: Using the Matlab DNAMelter GUI‏‎ (2 categories)
  135. Super resolution microscopy‏‎ (2 categories)
  136. Matlab: Scalebars‏‎ (2 categories)
  137. Spring 2011:3D PSF lab‏‎ (2 categories)
  138. DNA Melting Part 2: Lock-in Amplifier and Temperature Control‏‎ (2 categories)
  139. Assignment 9, Part 1: Analyze two-color yeast images‏‎ (2 categories)
  140. Assignment 3, Part 2: experimental design with fluorescence‏‎ (2 categories)
  141. Compound Microscope Example‏‎ (2 categories)
  142. Assignment 7: Amplifiers and feedback‏‎ (2 categories)
  143. Protocols‏‎ (2 categories)
  144. DNA Melting II: Using the Matlab DNALockIn GUI‏‎ (2 categories)
  145. Cellular microrheology‏‎ (2 categories)
  146. Final Project Proposal Williams‏‎ (2 categories)
  147. Beam Expander Example‏‎ (2 categories)
  148. SToNCalculator.m‏‎ (2 categories)
  149. Electronics boot camp I: passive circuits and transfer functions‏‎ (2 categories)

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