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  • DNA Melting Part 1: Measuring Temperature and Fluorescence
    ...te the data to a file. The data will be tab-delimited and can be read into Matlab with the <code>load</code> command. * If the DAQ gets short-circuited, it may crash. If this happens, Matlab will frequently give a deceptive error message, for example claiming that t
    27 KB (4,497 words) - 17:49, 19 April 2017
  • DNA Melting Part 2: Lock-in Amplifier and Temperature Control
    # Run the <tt>LockInGUI</tt> in MATLAB. ... good data, then click "Save Data" to record this data to disk. Next, open Matlab, load your SNR output file into an array and run its transpose through the
    20 KB (3,227 words) - 20:05, 7 November 2017
  • Matlab:Simulating DNA melting
    #REDIRECT [[Matlab:Simulating DNA Melting]]
    43 B (5 words) - 18:25, 28 August 2011
  • DNA Melting: Model function and parameter estimation by nonlinear regression
    [[Category:Matlab]] ...m <math>H(\omega)=\frac{1}{\tau s+1}=\frac{1}{\tau j \omega+1}</math>. The MATLAB function [http://www.mathworks.com/help/control/ref/tf.html tf] constructs
    18 KB (2,803 words) - 21:55, 17 August 2017
  • Sandbox
    * [[MATLAB: Estimating resolution from a PSF slide image]] * [[Matlab: Scalebars]]
    4 KB (512 words) - 21:42, 16 August 2016
  • DNA Melting Thermodynamics
    ...right .</math>. Unfortunately, this gets pretty yucky. On the bright side, Matlab and Python are good at calculating yuck.}}
    6 KB (986 words) - 21:43, 1 November 2013
  • DNA Melting: Simulating DNA Melting - Intermediate Topics
    [[Category:Matlab]] To simulate noise, we can use Matlab's <tt>randn</tt> function, which generates normally distributed random numb
    9 KB (1,281 words) - 21:46, 17 August 2017
  • Assignment 8, Part 2: lock-in amplifier and temperature control
    # In MATLAB, run the <tt>LockinGUI</tt> function. ... data, then click "Open file..." to record this data to disk. Next, at the Matlab command line, load your SNR output file into an array and run its transpose
    17 KB (2,813 words) - 22:56, 7 November 2017
  • DNA Melting Report Requirements
    * Remember to append your Matlab code at the end of the pdf file.
    6 KB (864 words) - 18:50, 16 April 2017
  • DNA melting: Identifying the unknown sample
    ... be <math>1-0.95^6\approx 26%</math>. The <tt>multcompare</tt> function in MATLAB implements a correction to the t-test procedure to assure that the ''family ==Multiple comparisons in MATLAB==
    12 KB (1,931 words) - 18:49, 28 November 2017
  • Matlab:Division operators
    [[Category:Matlab]] ==Division operators in Matlab===
    2 KB (283 words) - 14:15, 10 September 2009
  • Python:Simulating DNA Melting
    ...long with the explanatory writeup from [[Matlab:Simulating DNA melting|the Matlab version]] while it runs. In addition to Python, you will need to have insta ...sive cooling. It differs slightly from [[Matlab:Simulating DNA melting|the Matlab writeup]], which was back when forced heating and cooling didn't exist and
    12 KB (1,459 words) - 10:25, 24 May 2011
  • Matlab:Matlab Fundamentals
    [[category:Matlab]] ==Starting Matlab==
    534 B (56 words) - 06:29, 2 September 2009
  • BE Classroom Computer Documentation
    * Matlab (download latest from http://www.mathworks.com)
    1 KB (194 words) - 19:33, 8 August 2014
  • Optical Microscopy Week 3: Experiments
    ...ng_Brownian_Motion this page] for more discussion of Brownian motion and a Matlab simulation.
    15 KB (2,322 words) - 17:14, 18 September 2012
  • Spring09:Todo list
    *** Matlab licenses and configurations
    1 KB (163 words) - 23:56, 9 January 2009
  • 20.309:Course Information
    ...ng Windows 10. Each PC has a National Instruments data acquisition system. MATLAB and LabVIEW software are installed on all lab PCs.
    5 KB (714 words) - 16:37, 7 February 2020
  • Matlab:Image Processing for Fluorescent Microscopy
    [[category:Matlab]] The most important command in Matlab is: <code>doc</code>. For example, type <code>doc imread</code> to get the
    5 KB (752 words) - 22:54, 26 October 2009
  • Lab Manual: Atomic Force Microscopy (AFM)
    ...in <xr id="fig:fig2">Figure %i</xr>. The piezo disk is controlled from the matlab scanning software, which is described in ''[[Lab Manual: Atomic Force Micro ...fine):''' Actuating the piezo disk over a few hundred nanometers using the matlab software. For x- and y-axis positioning (in the sample plane), coarse move
    56 KB (9,320 words) - 20:42, 13 December 2017
  • ThorLabs OTKB optical trapping kit
    ==Matlab OTKB GUI== The manual that describes how to operate the Matlab OTKB GUI as well as describes the hardware setup and shows a picture of the
    24 KB (4,010 words) - 15:32, 5 August 2010
  • Matlab: Simulating Brownian motion
    ...plots a histogram of the values. The second argument - 25 - specifies that Matlab should divide the values into 25 bins.</p> ...lacements. Their sum represents a particle trajectory in 1 dimension. The Matlab function <tt>cumsum</tt> returns the cumulative sum of a vector. The follow
    23 KB (3,474 words) - 21:28, 4 June 2015
  • Fall 2010: Problem Set 3
    Using the example code from the Simulating Brownian Motion in Matlab tutorial (or any other simulation environment you like):
    3 KB (526 words) - 18:41, 28 September 2010
  • Procedure: Particle tracking
    *Computer with Matlab and latest version of particle tracker #Use the Matlab function <code>track</code> to separate the centroids into individual traje
    5 KB (736 words) - 22:05, 4 October 2010
  • Microscopy report outline
    * Include any MATLAB code you developed in an appendix at the end of your report.
    2 KB (351 words) - 17:04, 11 January 2017
  • Spring 2011:3D PSF lab
    The computer controlled stage is being attempted with Matlab software, but it is really easy to just switch to Python control if preferr The camera adapter for Matlab has been successfully installed, but again it would be straightforward to s
    7 KB (1,125 words) - 18:06, 19 March 2014
  • DNA Melting: Simulating DNA Melting - Basics
    [[Category:Matlab]] This tutorial will show you how to simulate the DNA melting experiment with Matlab. The DNA melting apparatus you will build produces two output voltages rela
    13 KB (2,026 words) - 22:46, 15 April 2018
  • Python:DNA melting data analysis
    Matlab .m file, just two columns of numbers. (First column is RTD voltages Matlab because you have to tell scipy and matplotlib how to talk to each
    2 KB (307 words) - 05:02, 13 April 2011
  • Confocal Wiki
    Matlab code existed to generate a laser scan over the sample and to recompose the
    21 KB (3,664 words) - 21:38, 4 June 2015
  • Photobleaching Model
    ...imulating_DNA_melting#Improving_the_model:_photobleaching_.28optional.29 | Matlab DNA melting simulation writeup]] has a fixed percentage of the active fluor ...00059s] check out equation 5, it looks pretty much like what we had in the matlab page. But... their timescales are different, and their derivation rests on
    11 KB (1,755 words) - 23:31, 18 July 2011
  • DNA Melter Improvements
    == Translating MATLAB Into Python ==
    11 KB (1,864 words) - 21:20, 22 July 2011
  • DNA Melting: Processing DNA Melting Data
    Fantastic. You have some [[Matlab:Simulating DNA melting|simulated data]] or [[Lab Manual:Measuring DNA Melti ...thon data analysis are significantly less developed than the corresponding Matlab cribs. Nonlinear fitting in Python has been challenging. If you decide to u
    7 KB (1,108 words) - 17:58, 8 October 2011
  • Converting Gaussian fit to Rayleigh resolution
    [[Category:Matlab]]
    2 KB (292 words) - 23:08, 22 February 2015
  • Optical Microscopy: Part 2 Report Outline
    ... single set of axes for comparison. (Use the <tt>improfile</tt> command in MATLAB.)
    1 KB (227 words) - 18:29, 30 September 2015
  • Williams: Optical Trapping Lab 1
    Matlab : programming language using 'daqtoolbox'<br/> ... is supposed to provide specific functionality, and a bit about the gui in MATLAB. After writing the code, our goals expanded to include writing code to simu
    12 KB (1,943 words) - 03:57, 12 March 2012
  • Resource list: Matlab
    [[Category:Matlab]]
    203 B (20 words) - 18:02, 13 August 2013
  • Course Journal -- Nathan S Lachenmyer
    ** If this doesn't work, restart Matlab
    3 KB (464 words) - 21:52, 27 February 2012
  • Spring 2012:Leanna Morinishi Lab 1
    ...h is supposed to provide specific functionality, and a bit about the UI in MATLAB. Beyond this, we tried to: * How to put a button on a UI in Matlab!!
    13 KB (2,020 words) - 19:56, 9 March 2012
  • Spring 2012: Ajoke Jumoke Williams
    ... taking a Modern Optics class and working in a UROP where I mostly code in matlab, which is pretty ironic since geometric optics was not my friend my sophomo
    2 KB (310 words) - 03:23, 20 May 2012
  • Spring 2012:Leanna Morinishi Journal
    ...ion skin! Looks interesting, can't really do anything beyond that since my Matlab just refuses to do anything. * Matlab continues to give me the error: Undefined function or variable 'parforstart
    14 KB (2,366 words) - 04:50, 17 May 2012
  • Spring 2012:Leanna Morinishi Lab 2
    * Matlab * Matlab Image Acquisition Toolbox<ref>[http://www.mathworks.com/products/imaq/ Math
    6 KB (951 words) - 20:16, 20 March 2012
  • A.Williams: Objectives and Literature Review
    ... with two bessel beams. My goal is to be that time be familiar enough with matlab and bessel beams and holography algorithms, calibrations that should take
    7 KB (1,162 words) - 07:22, 14 March 2012
  • Resource list: Image Enhancement
    [[Category:Matlab]]
    403 B (45 words) - 18:02, 13 August 2013
  • Williams: PSF and Deconvolution Lab 2
    <li>Matlab</li> <li>Matlab Image Acquisition Toolbox[3]</li>
    7 KB (1,229 words) - 02:54, 1 April 2012
  • Spring 2012:Vincent Lee Journal
    Lightfield processing in MATLAB Matlab help. It has been gloriously helpful. I am pretty sure how I can and how I
    8 KB (1,373 words) - 18:43, 13 August 2013
  • Spring 2012:Vincent Lee Lab 2
    * Matlab * Matlab Image Acquisition Toolbox<ref>[http://www.mathworks.com/products/imaq/ Math
    4 KB (611 words) - 21:37, 4 June 2015
  • Spring 2012: Jonathan Gootenberg Lab 2
    * Controlling the microstepper with the DAQ/Matlab interface * Matlab
    6 KB (940 words) - 02:47, 23 May 2012
  • Understanding the lock-in amplifier
    ...his simulation, we have modeled room noise with a Brown noise generator in Matlab because Brown noise is stronger in low frequencies, similar to the room noi <b>Figure 5.</b> In our MATLAB simulation, we generated a low-pass filter and passed the signal from Point
    15 KB (1,965 words) - 16:36, 13 November 2017
  • Optical Microscopy Part 4: Particle Tracking
    ...ng_Brownian_Motion this page] for more discussion of Brownian motion and a Matlab simulation.
    9 KB (1,469 words) - 01:01, 10 March 2016
  • Optical Microscopy: Part 3 Report Outline
    <li>Explain the Matlab algorithm used for data analysis.</li>
    2 KB (355 words) - 19:04, 7 March 2016
  • Optical Microscopy Part 1: Brightfield Microscopy
    ==Recording, displaying and saving images in MATLAB== foo.Initialize</tt>" into the MATLAB console window.</caption>]]
    23 KB (3,758 words) - 22:45, 12 January 2017

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