Difference between revisions of "20.309 Main Page"
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|style="width: 35%;"|'''Resources''' | |style="width: 35%;"|'''Resources''' | ||
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| − | | | + | | rowspan = "2"| Week 12: Apr. 23 - 29 |
| − | | | + | | rowspan = "2"| Finish DNA Melting 1, PSet 4 and get started on DNA Melting 2 |
| − | | <font color=#04B45F> | + | | rowspan = "2"| <font color=#04B45F> Tuesday Apr. 25th: DNA Melting Part 1 </font color> |
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| − | + | [[DNA Melting Part 1: Measuring Temperature and Fluorescence]] | |
| − | Overview | + | | Overview |
* [[Lab Manual:Measuring DNA Melting Curves]] | * [[Lab Manual:Measuring DNA Melting Curves]] | ||
Code examples and simulations | Code examples and simulations | ||
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* [[DNA Melting Report Requirements for Part 2]] | * [[DNA Melting Report Requirements for Part 2]] | ||
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| + | |Week 13: Apr. 30 - May 6 | ||
| + | | Wrap up DNA Melting 2 | ||
| + | | <font color=#04B45F> Sunday April 30: PSet 4 | ||
| + | (next week - Sunday May 7: DNA melting 2) </font color> | ||
| + | | [[DNA Melting Part 2: Lock-in Amplifier and Temperature Control]] | ||
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Revision as of 21:23, 23 April 2017
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20.309 This week and next
| Week | Summary | Assignments due | Lab Manual | Resources | |
| Week 12: Apr. 23 - 29 | Finish DNA Melting 1, PSet 4 and get started on DNA Melting 2 | Tuesday Apr. 25th: DNA Melting Part 1 | Overview
Code examples and simulations
Reference materials Background reading
|
||
| DNA Melting Part 2: Lock-in Amplifier and Temperature Control | |||||
| Week 13: Apr. 30 - May 6 | Wrap up DNA Melting 2 | Sunday April 30: PSet 4
(next week - Sunday May 7: DNA melting 2) |
DNA Melting Part 2: Lock-in Amplifier and Temperature Control |
Contents
20.309 course information
Reserve a lab station here: Bioinstrumentation Lab reservation system
Optics bootcamp
Lab manual
Background reading
- Geometrical optics and ray tracing
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
Optical microscopy lab
Code examples and simulations
- Converting Gaussian fit to Rayleigh resolution
- MATLAB: Estimating resolution from a PSF slide image
- Matlab: Scalebars
- Calculating MSD and Diffusion Coefficients
Background reading
- Geometrical optics and ray tracing
- Physical optics and resolution
- Optical aberrations
- Aperture and field stops
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Electronics bootcamp
Lab manual
Background reading
- Electronics primer
- Khan Academy Material, esp. "Ideal Circuit Elements" and "Voltage Divider"
- Real electronics
- Impedance analysis
- Transfer functions and Bode plots
- Complex number review
- Input and output impedance
DNA melting lab
Lab manuals
- Lab Manual:Measuring DNA Melting Curves
- DNA Melting Part 1: Measuring Temperature and Fluorescence
- DNA Melting Report Requirements for Part 1
- DNA Melting: Model function and parameter estimation by nonlinear regression
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA melting: Identifying the unknown sample
- DNA Melting Part 2: Lock-in Amplifier and Temperature Control
- DNA Melting Report Requirements for Part 2
Code examples and simulations
- DNA Melting: Simulating DNA Melting - Basics
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA Melting: Model function and parameter estimation by nonlinear regression
Reference materials
Background reading
Limits of detection mini-lab
- Lab Manual: Limits of Detection
- Lab Manual: Atomic Force Microscopy (AFM)
- Limits of Detection: Data Sessions
