Difference between revisions of "20.309 Main Page"
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Juliesutton (Talk | contribs) (→20.309 This week and next) |
Juliesutton (Talk | contribs) (→20.309 This week and next) |
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|style="width: 35%;"|'''Resources''' | |style="width: 35%;"|'''Resources''' | ||
|-- | |-- | ||
| − | | Week | + | | Week 9: Apr. 2 - 8 |
| − | | | + | | Get started with circuits in the electronics bootcamp and with PSet3 |
| | | | ||
| − | | | + | | [[Electronics Mini-Lab|Electronics bootcamp]] |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
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* [[Electronics primer]] | * [[Electronics primer]] | ||
| Line 38: | Line 32: | ||
* [[Complex Number Review|Complex number review]] | * [[Complex Number Review|Complex number review]] | ||
* [[Input and output impedance]] | * [[Input and output impedance]] | ||
| + | |-- | ||
| + | | Week 10: Apr. 9 - 15 | ||
| + | | Finish up the electronics bootcamp and PSet 3, get started on DNA Melting 1 | ||
| + | | <font color=#04B45F> Monday Apr. 10th: Electronics Bootcamp | ||
| + | Friday Apr. 14th: PSet 3</font color> | ||
| + | | [[Electronics Mini-Lab|Electronics bootcamp]] | ||
| + | [[DNA Melting Part 1: Measuring Temperature and Fluorescence]] | ||
| + | | | ||
| + | |||
| + | Overview | ||
| + | * [[Lab Manual:Measuring DNA Melting Curves]] | ||
| + | Code examples and simulations | ||
| + | * [[DNA Melting: Simulating DNA Melting - Basics]] | ||
| + | * [[DNA Melting: Simulating DNA Melting - Intermediate Topics]] | ||
| + | * [[DNA Melting: Model function and parameter estimation by nonlinear regression]] | ||
| + | Reference materials | ||
| + | * [[DNA Melting Thermodynamics]] | ||
| + | * [[DNA Melting: DNA Sequences]] | ||
| + | * [http://mfold.rna.albany.edu/?q=DINAMelt/Hybrid2 DINAMelt Web Server] | ||
| + | Background reading | ||
| + | * [[Electronics Primer]] | ||
| + | |||
| + | <!-- * [[Real electronics]] --> | ||
| + | |||
|} | |} | ||
</div> | </div> | ||
Revision as of 13:47, 3 April 2017
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20.309 This week and next
| Week | Summary | Assignments due | Lab Manual | Resources |
| Week 9: Apr. 2 - 8 | Get started with circuits in the electronics bootcamp and with PSet3 | Electronics bootcamp | ||
| Week 10: Apr. 9 - 15 | Finish up the electronics bootcamp and PSet 3, get started on DNA Melting 1 | Monday Apr. 10th: Electronics Bootcamp
Friday Apr. 14th: PSet 3 |
Electronics bootcamp |
Overview Code examples and simulations
Reference materials Background reading
|
Contents
20.309 course information
Reserve a lab station here: Bioinstrumentation Lab reservation system
Optics bootcamp
Lab manual
Background reading
- Geometrical optics and ray tracing
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
Optical microscopy lab
Code examples and simulations
- Converting Gaussian fit to Rayleigh resolution
- MATLAB: Estimating resolution from a PSF slide image
- Matlab: Scalebars
- Calculating MSD and Diffusion Coefficients
Background reading
- Geometrical optics and ray tracing
- Physical optics and resolution
- Optical aberrations
- Aperture and field stops
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Electronics bootcamp
Lab manual
Background reading
- Electronics primer
- Khan Academy Material, esp. "Ideal Circuit Elements" and "Voltage Divider"
- Real electronics
- Impedance analysis
- Transfer functions and Bode plots
- Complex number review
- Input and output impedance
DNA melting lab
Lab manuals
- Lab Manual:Measuring DNA Melting Curves
- DNA Melting Part 1: Measuring Temperature and Fluorescence
- DNA Melting Report Requirements for Part 1
- DNA Melting: Model function and parameter estimation by nonlinear regression
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA melting: Identifying the unknown sample
- DNA Melting Part 2: Lock-in Amplifier and Temperature Control
- DNA Melting Report Requirements for Part 2
Code examples and simulations
- DNA Melting: Simulating DNA Melting - Basics
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA Melting: Model function and parameter estimation by nonlinear regression
Reference materials
Background reading
Limits of detection mini-lab
- Lab Manual: Limits of Detection
- Lab Manual: Atomic Force Microscopy (AFM)
- Limits of Detection: Data Sessions
