Difference between revisions of "20.109(S09): Spring 2009 schedule"
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| ANS | | ANS | ||
| | | | ||
− | | [ | + | | [http://openwetware.org/wiki/20.109(S09):Lab_tour | Orientation] |
− | | | + | | *[[Media:20.109_OrientLect(S09)-given.pdf | Introductory Lecture (PDF)]] <br>*[[Media:S09_Orient_Pre-Lab_Given.pdf | Intro Pre-Lab, T/R]] |
|-- | |-- | ||
| colspan="7" | | | colspan="7" | | ||
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| Thur Feb 5 | | Thur Feb 5 | ||
| AJ | | AJ | ||
− | | | + | | [http://openwetware.org/wiki/User:Naiyan_Chen | NC] |
− | | | + | | [[20.109(S09):Start-up protein engineering (Day1)| Day 1: Start-up protein engineering]] |
− | | | + | | *[[Media:20109_S09-M1Lec1_Jasanoff.pdf | M1D1 Lecture]]<br> *[[Media:S09_M1D1-ANS-marked.pdf | M1D1 Pre-Lab]] |
|-- | |-- | ||
| 1 | | 1 | ||
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| Tue Feb 10 | | Tue Feb 10 | ||
| AJ | | AJ | ||
− | | | + | | [http://openwetware.org/wiki/User:Naiyan_Chen | NC] |
− | | | + | | [[20.109(S09):Site-directed mutagenesis (Day2)| Day 2: Site-directed mutagenesis]] |
− | | | + | |*[[Media:20109_S09-M1Lec2_Jasanoff.pdf | M1D2 Lecture]]<br> *[[Media:S09_M1D2-ANS-marked.pdf | M1D2 Pre-Lab]] |
|-- | |-- | ||
| 1 | | 1 | ||
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| Thur Feb 12 | | Thur Feb 12 | ||
| AJ | | AJ | ||
− | | | + | | [http://openwetware.org/wiki/User:Naiyan_Chen | NC] |
− | | | + | | [[20.109(S09):Bacterial amplification of DNA (Day3)| Day 3: Bacterial amplification of DNA]] |
− | | | + | |*[[Media:20109_S09-M1Lec3_Jasanoff.pdf | M1D3 Lecture]]<br> *[[Media:S09_M1D3-ANS-marked.pdf | M1D3 Pre-Lab]] |
|-- | |-- | ||
| | | | ||
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| Thur Feb 19 | | Thur Feb 19 | ||
| AJ | | AJ | ||
− | | | + | | [http://openwetware.org/wiki/User:Naiyan_Chen | NC] |
− | | | + | | [[20.109(S09):Prepare expression system (Day4)| Day 4: Prepare expression system]] |
− | | | + | |*[[Media:20109_S09-M1Lec4_Jasanoff.pdf | M1D4 Lecture]]<br> *[[Media:S09_M1D4-ANS-marked.pdf | M1D4 Pre-Lab]] |
|-- | |-- | ||
| 1 | | 1 | ||
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| Tue Feb 24 | | Tue Feb 24 | ||
| AJ | | AJ | ||
− | | | + | | [http://openwetware.org/wiki/User:Naiyan_Chen | NC] |
− | | | + | | [[20.109(S09):Induce protein and evaluate DNA (Day5)| Day 5: Induce protein and evaluate DNA]] |
− | | | + | |*[[Media:20109_S09-M1Lec5_Jasanoff.pdf | M1D5 Lecture]]<br> *[[Media:S09_M1D5-ANS-marked.pdf | M1D5 Pre-Lab]] |
|-- | |-- | ||
| 1 | | 1 | ||
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| Thur Feb 26 | | Thur Feb 26 | ||
| AJ | | AJ | ||
− | | | + | | [http://openwetware.org/wiki/User:Naiyan_Chen | NC] |
− | | | + | | [[20.109(S09):Characterize protein expression (Day6)| Day 6: Characterize protein expression]] |
− | | | + | |*[[Media:20109_S09-M1Lec6_Jasanof.pdf | M1D6 Lecture]]<br> *[[Media:S09_M1D6-ANS-marked.pdf | M1D6 Pre-Lab]] |
|-- | |-- | ||
| 1 | | 1 | ||
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| Tue Mar 3 | | Tue Mar 3 | ||
| AJ | | AJ | ||
− | | | + | | [http://openwetware.org/wiki/User:Naiyan_Chen | NC] |
− | | | + | | [[20.109(S09):Assay protein behavior (Day7)| Day 7: Assay protein behavior]] |
− | | | + | |*[[Media:20109_S09-M1Lec7_Jasanoff.pdf | M1D7 Lecture]] |
|-- | |-- | ||
| 1 | | 1 | ||
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| Thur Mar 5 | | Thur Mar 5 | ||
| AJ | | AJ | ||
− | | | + | | [http://openwetware.org/wiki/User:Naiyan_Chen | NC] |
− | | | + | | [[20.109(S09):Data analysis (Day8)| Day 8: Data analysis]] |
− | | | + | |*[[Media: 20109_S09-M1Lec8_Jasanoff.pdf | M1D8 Lecture]] |
|-- | |-- | ||
| colspan="7" | | | colspan="7" | | ||
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| Tue Mar 10 | | Tue Mar 10 | ||
| LS | | LS | ||
− | | | + | | [http://openwetware.org/wiki/User:Stephen_J._Goldfless | SG] |
− | | | + | | [[20.109(S09): siRNA design (Day1)| Day 1: siRNA design and introduction to cell culture]] |
− | | | + | | <font color = CC0000><b>Module 1 Draft Due</b></font color><br>*[[Media:20109_S09-M2Lec1_Samson.pdf | M2D1 Lecture]]<br> *[[Media:S09_M2D1-ANS-marked.pdf | M2D1 Pre-Lab]] |
|-- | |-- | ||
| 2 | | 2 | ||
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| Thur Mar 12 | | Thur Mar 12 | ||
| LS | | LS | ||
− | | | + | | [http://openwetware.org/wiki/User:Stephen_J._Goldfless | SG] |
− | | | + | | [[20.109(S09): Journal article discussion (Day2) | Day 2: Journal article discussion]] |
− | | | + | |*[[Media:20109_S09-M2Lec2_Samson.pdf | M2D2 Lecture]]<br> *[[Media:S09_M2D2-1-ANS-marked.pdf | M2D2 Pre-Lab, part 1]] <br>*Atissa's slides on her [http://openwetware.org/wiki/User:Atissa | user page]<br> *[[Media:S09-M2D2-2-ANS.pdf | M2D2 Pre-Lab, part 2]] |
|-- | |-- | ||
| 2 | | 2 | ||
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| Tue Mar 17 | | Tue Mar 17 | ||
| LS | | LS | ||
− | | | + | | [http://openwetware.org/wiki/User:Stephen_J._Goldfless | SG] |
− | | | + | | [[20.109(S09): Module 2 oral presentations| Day 3: Journal Club]] |
− | | | + | | NO LECTURE |
|-- | |-- | ||
| 2 | | 2 | ||
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| Thur Mar 19 | | Thur Mar 19 | ||
| LS | | LS | ||
− | | | + | | [http://openwetware.org/wiki/User:Stephen_J._Goldfless | SG] |
− | | | + | | [[20.109(S09): Module 2 oral presentations| Day 4: Journal Club]] |
− | | | + | | Lecture: feedback on Module 1 draft reports<br>*Neal's slides on his [http://openwetware.org/wiki/User:Nlerner | user page] |
|-- | |-- | ||
| | | | ||
Line 134: | Line 134: | ||
| Tue Mar 31 | | Tue Mar 31 | ||
| LS | | LS | ||
− | | | + | | [http://openwetware.org/wiki/User:Stephen_J._Goldfless | SG] |
− | | | + | | [[20.109(S09): Transfection (Day5) | Day 5: Transfection]] |
− | | | + | |*[[Media:20109_S09-M2Lec5_Samson.pdf | M2D5 Lecture]]<br> *[[Media:S09_M2D5-ANS-marked.pdf | M2D5 Pre-Lab]] |
|-- | |-- | ||
| 2 | | 2 | ||
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| Thur Apr 2 | | Thur Apr 2 | ||
| LS | | LS | ||
− | | | + | | [http://openwetware.org/wiki/User:Stephen_J._Goldfless | SG] |
− | | | + | | [[20.109(S09): Luciferase assays and RNA prep (Day6) | Day 6: Luciferase assays and RNA prep]] |
− | | | + | | <font color = CC0000><b>Module 1 Final Report Due</b></font color><br>*[[Media:20109_S09-M2Lec6_Samson.pdf | M2D6 Lecture]]<br> *[[Media:S09_M2D6-ANS-marked.pdf | M2D6 Pre-Lab]] |
|-- | |-- | ||
| 2 | | 2 | ||
Line 150: | Line 150: | ||
| Tue Apr 7 | | Tue Apr 7 | ||
| LS | | LS | ||
− | | | + | | [http://openwetware.org/wiki/User:Stephen_J._Goldfless | SG] |
− | | | + | | [[20.109(S09): cDNA synthesis and microarray (Day7)| Day 7: cDNA synthesis and microarray]] |
− | | | + | |*[[Media:20109_S09-M2Lec7_Svensson.pdf | M2D7 Lecture]]<br> *[[Media:S09_M2D7-ANS-marked.pdf | M2D7 Pre-Lab]] |
|-- | |-- | ||
| 2 | | 2 | ||
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| Thur Apr 9 | | Thur Apr 9 | ||
| LS | | LS | ||
− | | | + | | [http://openwetware.org/wiki/User:Stephen_J._Goldfless | SG] |
− | | | + | | [[20.109(S09): Microarray data analysis (Day8)| Day 8: Microarray data analysis]] |
− | | | + | |*[[Media:20109_S09-M2Lec8_Samson.pdf | M2D8 Lecture]]<br> *[[Media:S09_M2D8-ANS.pdf | M2D8 Pre-Lab, ANS]] <br> *[[Media:S09_M2D8-SJG.pdf | M2D8 Pre-Lab, SJG]] |
|-- | |-- | ||
| colspan="7" | | | colspan="7" | | ||
Line 167: | Line 167: | ||
| 1 | | 1 | ||
| Tues Apr 14 | | Tues Apr 14 | ||
− | | [ | + | | [http://openwetware.org/wiki/User:AgiStachowiak | ANS] |
− | | | + | | [http://openwetware.org/wiki/Lily_Jeng |LJ] |
− | | | + | |[[20.109(S09):Start-up biomaterials engineering (Day1)| Day 1: Start-up biomaterials engineering]] |
− | | | + | |<font color = CC0000><b>Module 2 Draft Due *see update*</b></font color><br>*[[Media:20109_S09-M3Lec1_Stachowiak.pdf | M3D1 Lecture]]<br> *[[Media:S09_M3D1-ANS-marked.pdf | M3D1 Pre-Lab]] |
|-- | |-- | ||
| 3 | | 3 | ||
| 2 | | 2 | ||
| Thur Apr 16 | | Thur Apr 16 | ||
− | | [ | + | | [http://openwetware.org/wiki/User:AgiStachowiak | ANS] |
− | | | + | | [http://openwetware.org/wiki/Lily_Jeng |LJ] |
− | | | + | |[http://openwetware.org/wiki/20.109(S09):Initiate_cell_culture_(Day2) | Day 2: Initiate cell culture] |
− | | | + | |*[[Media:20109_S09-M3Lec2_Stachowiak.pdf | M3D2 Lecture]] |
|-- | |-- | ||
| | | | ||
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| 3 | | 3 | ||
| Thur Apr 23 | | Thur Apr 23 | ||
− | | [ | + | | [http://openwetware.org/wiki/User:AgiStachowiak | ANS] |
− | | | + | |[http://openwetware.org/wiki/Lily_Jeng |LJ] |
− | | | + | |[http://openwetware.org/wiki/20.109(S09):Testing_cell_viability_(Day3) | Day 3: Testing cell viability] |
− | | | + | |*[[Media:20109_S09-M3Lec3_Stachowiak.pdf | M3D3 Lecture]] |
|-- | |-- | ||
| 3 | | 3 | ||
| 4 | | 4 | ||
| Tue Apr 28 | | Tue Apr 28 | ||
− | | [ | + | | [http://openwetware.org/wiki/User:AgiStachowiak | ANS] |
− | | | + | |[http://openwetware.org/wiki/Lily_Jeng |LJ] |
− | | | + | |[http://openwetware.org/wiki/20.109(S09):Preparing_cells_for_analysis_(Day4) | Day 4: Preparing cells for analysis] |
− | | | + | |*[[Media:20109_S09-M3Lec4_Stachowiak.pdf | M3D4 Lecture]]<br>*[[Media:S09_M3D4-ANS-marked.pdf | M3D4 Pre-Lab]] |
|-- | |-- | ||
| 3 | | 3 | ||
| 5 | | 5 | ||
| Thur Apr 30 | | Thur Apr 30 | ||
− | | [ | + | | [http://openwetware.org/wiki/User:AgiStachowiak | ANS] |
− | | | + | | [http://openwetware.org/wiki/Lily_Jeng |LJ] |
− | | | + | |[http://openwetware.org/wiki/20.109(S09):Transcript-level_analysis_(Day5) | Day 5: Transcript-level analysis] |
− | | | + | |<font color = CC0000><b>Module 2 Final Report Due</b></font color><br>*[[Media:20109_S09-M3Lec5_Stachowiak.pdf | M3D5 Lecture]]<br>*[[Media:S09_M3D5-ANS-marked.pdf | M3D5 Pre-Lab]] |
|-- | |-- | ||
| 3 | | 3 | ||
| 6 | | 6 | ||
| Tue May 5 | | Tue May 5 | ||
− | | [ | + | | [http://openwetware.org/wiki/User:AgiStachowiak | ANS] |
− | | | + | | [http://openwetware.org/wiki/Lily_Jeng |LJ] |
− | | | + | |[[20.109(S09):Protein-level analysis (Day6)| Day 6: Protein-level analysis]] |
− | | | + | |*Atissa's slides on her [http://openwetware.org/wiki/User:Atissa | user page]<br> *[[Media:S09_M3D6-ANS-marked.pdf | M3D6 Pre-Lab]] |
|-- | |-- | ||
| 3 | | 3 | ||
| 7 | | 7 | ||
− | | Thur May | + | | Thur May 7 |
− | | [ | + | | [http://openwetware.org/wiki/User:AgiStachowiak | ANS] |
− | | | + | | [http://openwetware.org/wiki/Lily_Jeng |LJ] |
− | | | + | |[[20.109(S09):Wrap-up analysis (Day7)| Day 7: Wrap-up analysis]] |
− | | | + | |<font color = CC0000><b>Module 3 Report Due</b></font color><br> Chalkboard lecture on drug + gene delivery (won't be posted).<br> *[[Media:S09_M3D7-ANS-marked.pdf | M3D7 Pre-Lab]] |
|-- | |-- | ||
| 3 | | 3 | ||
| 8 | | 8 | ||
| Tue May 12 | | Tue May 12 | ||
− | | [ | + | | [http://openwetware.org/wiki/User:AgiStachowiak | ANS] |
− | | | + | |[http://openwetware.org/wiki/Lily_Jeng |LJ] |
− | | | + | |[http://openwetware.org/wiki/20.109(S09):Student_presentations_(Day8) | Day 8: Student presentations] |
− | | | + | |Chalkboard lecture: Module 3 analysis/results, scaffold fabrication, clinical examples (won't be posted). |
|-- | |-- | ||
| | | | ||
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| | | | ||
| | | | ||
− | | No lab session. Evaluations during lecture, then celebratory lunch, | + | | No lab session. Evaluations during lecture, then celebratory lunch, in 56-614 from 12:30-2 pm. |
| | | | ||
|} | |} |
Latest revision as of 19:33, 28 July 2015
MODULE | DAY | DATE | LECTURER | TA | LAB | note |
Tue Feb 3 | ANS | Orientation] | * Introductory Lecture (PDF) * Intro Pre-Lab, T/R | |||
1 | 1 | Thur Feb 5 | AJ | NC] | Day 1: Start-up protein engineering | * M1D1 Lecture * M1D1 Pre-Lab |
1 | 2 | Tue Feb 10 | AJ | NC] | Day 2: Site-directed mutagenesis | * M1D2 Lecture * M1D2 Pre-Lab |
1 | 3 | Thur Feb 12 | AJ | NC] | Day 3: Bacterial amplification of DNA | * M1D3 Lecture * M1D3 Pre-Lab |
President's Day Feb 16 | No lab Feb 17 or Feb 18 | |||||
---|---|---|---|---|---|---|
1 | 4 | Thur Feb 19 | AJ | NC] | Day 4: Prepare expression system | * M1D4 Lecture * M1D4 Pre-Lab |
1 | 5 | Tue Feb 24 | AJ | NC] | Day 5: Induce protein and evaluate DNA | * M1D5 Lecture * M1D5 Pre-Lab |
1 | 6 | Thur Feb 26 | AJ | NC] | Day 6: Characterize protein expression | * M1D6 Lecture * M1D6 Pre-Lab |
1 | 7 | Tue Mar 3 | AJ | NC] | Day 7: Assay protein behavior | * M1D7 Lecture |
1 | 8 | Thur Mar 5 | AJ | NC] | Day 8: Data analysis | * M1D8 Lecture |
2 | 1 | Tue Mar 10 | LS | SG] | Day 1: siRNA design and introduction to cell culture | Module 1 Draft Due * M2D1 Lecture * M2D1 Pre-Lab |
2 | 2 | Thur Mar 12 | LS | SG] | Day 2: Journal article discussion | * M2D2 Lecture * M2D2 Pre-Lab, part 1 *Atissa's slides on her | user page * M2D2 Pre-Lab, part 2 |
2 | 3 | Tue Mar 17 | LS | SG] | Day 3: Journal Club | NO LECTURE |
2 | 4 | Thur Mar 19 | LS | SG] | Day 4: Journal Club | user page] |
Spring Break Mar 23-27 | No lab all week | |||||
2 | 5 | Tue Mar 31 | LS | SG] | Day 5: Transfection | * M2D5 Lecture * M2D5 Pre-Lab |
2 | 6 | Thur Apr 2 | LS | SG] | Day 6: Luciferase assays and RNA prep | Module 1 Final Report Due * M2D6 Lecture * M2D6 Pre-Lab |
2 | 7 | Tue Apr 7 | LS | SG] | Day 7: cDNA synthesis and microarray | * M2D7 Lecture * M2D7 Pre-Lab |
2 | 8 | Thur Apr 9 | LS | SG] | Day 8: Microarray data analysis | * M2D8 Lecture * M2D8 Pre-Lab, ANS * M2D8 Pre-Lab, SJG |
3 | 1 | Tues Apr 14 | ANS] | LJ] | Day 1: Start-up biomaterials engineering | Module 2 Draft Due *see update* * M3D1 Lecture * M3D1 Pre-Lab |
3 | 2 | Thur Apr 16 | ANS] | LJ] | Day 2: Initiate cell culture] | * M3D2 Lecture |
Patriot's Day April 20-21 | No lab Apr 21 or Apr 22 | |||||
3 | 3 | Thur Apr 23 | ANS] | LJ] | Day 3: Testing cell viability] | * M3D3 Lecture |
3 | 4 | Tue Apr 28 | ANS] | LJ] | Day 4: Preparing cells for analysis] | * M3D4 Lecture * M3D4 Pre-Lab |
3 | 5 | Thur Apr 30 | ANS] | LJ] | Day 5: Transcript-level analysis] | Module 2 Final Report Due * M3D5 Lecture * M3D5 Pre-Lab |
3 | 6 | Tue May 5 | ANS] | LJ] | Day 6: Protein-level analysis | user page] * M3D6 Pre-Lab |
3 | 7 | Thur May 7 | ANS] | LJ] | Day 7: Wrap-up analysis | Module 3 Report Due Chalkboard lecture on drug + gene delivery (won't be posted). * M3D7 Pre-Lab |
3 | 8 | Tue May 12 | ANS] | LJ] | Day 8: Student presentations] | Chalkboard lecture: Module 3 analysis/results, scaffold fabrication, clinical examples (won't be posted). |
Thur May 14 | No lab session. Evaluations during lecture, then celebratory lunch, in 56-614 from 12:30-2 pm. |