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  • DNA Melting Part 2: Lock-in Amplifier and Temperature Control
    ...a much higher frequency. So rip that sucker off — now your amplifier needs to work on a signal that is changing much more quickly. ...iki page]] to become familiar with the software. You may find it useful to review the block diagram again on the [[Understanding the lock-in amplifier]] wiki
    20 KB (3,227 words) - 20:05, 7 November 2017
  • Lab Manual: Measuring DNA Melting Curves
    ...ntary olives. See the [[DNA Melting Thermodynamics|this wiki page]] for a review of the temperature-dependent equilibrium between single-stranded and double ...hermodynamics before (or if it has been a while since you have), see this review of [[DNA Melting Thermodynamics]] before you go on.
    10 KB (1,473 words) - 03:39, 13 April 2016
  • Assignment 8, Part 2: lock-in amplifier and temperature control
    ...a much higher frequency. So rip that sucker off — now your amplifier needs to work on a signal that is changing much more quickly. ...iki page]] to become familiar with the software. You may find it useful to review the block diagram again on the [[Understanding the lock-in amplifier]] wiki
    17 KB (2,813 words) - 22:56, 7 November 2017
  • Electronics primer
    ==Review of electrical units and equations== ...itle=Electronics_Primer#Primary_definitions Primary definitions] and also review [http://measure.mit.edu/~20.309/wiki/index.php?title=Electronics_Primer#Con
    22 KB (3,534 words) - 13:50, 19 October 2018
  • 20.309:Course Information
    [[Category:Needs review]]
    5 KB (714 words) - 16:37, 7 February 2020
  • Lab Manual: Atomic Force Microscopy (AFM)
    ...perational principles of a commercial AFM. You may also find it helpful to review some of the ''[[Lab Manual: Atomic Force Microscopy (AFM)#References|refere To be useful for imaging, an AFM needs to scan its probe over the sample surface. Our microscopes are designed wit
    56 KB (9,320 words) - 20:42, 13 December 2017
  • Resource list: Particle tracking
    ...Mason1997.pdf Particle Tracking Microrheology of Complex Fluids]. Physical Review Letters, Volume 79, Number 17, 27 October 1997.
    810 B (94 words) - 18:03, 13 August 2013
  • Resource list: Electronics
    ==Electronics Review==
    459 B (49 words) - 14:32, 23 August 2013
  • 20.345:Course Information
    ...e not previously studied geometric optics or those in need of a refresher. Review sessions on electronics and linear systems will also be offered. The value of a careful literature review cannot be understated. This frequently neglected step can make the differen
    11 KB (1,722 words) - 17:22, 6 February 2018
  • Spring 2011:CellFinder
    *we have little electronics experience, and Jenn needs an electronics review :)
    4 KB (610 words) - 00:07, 3 April 2011
  • Spring 11:SMR
    * review synthesizible and unsynthesizable commands
    3 KB (414 words) - 16:56, 15 April 2011
  • Spring 11 ChemotaxisAssayWeeklyReports
    * Review particle tracking code
    690 B (93 words) - 02:09, 19 March 2011
  • Spring 11 Chemotaxis Assay Weekly Reports
    * Review particle tracking code
    690 B (93 words) - 02:15, 19 March 2011
  • DNA Melting: Simulating DNA Melting - Basics
    *Review the [[DNA Melting Thermodynamics|DNA Melting Thermodynamics Notes]]. *If you need a review of Matlab fundamentals, see [[Matlab:Matlab Fundamentals|Matlab Fundamental
    13 KB (2,026 words) - 22:46, 15 April 2018
  • Confocal Wiki
    ... suggested experiments for approximately $20,000. Based on our literature review, such a system does not currently exist.
    21 KB (3,664 words) - 21:38, 4 June 2015
  • Reference List
    Huang, B. a. (2009). Super resolution fluorescence microscopy. Annual review of biochemistry, 993-1016.
    2 KB (233 words) - 20:37, 19 May 2011
  • Spring 2012 Bioinstrumentation Project Lab
    * [[A.Williams:_Objectives_and_Literature_Review| Objectives & Literature Review -- Ajoke Williams]]
    927 B (112 words) - 05:02, 18 May 2012
  • Spring 2012: Ajoke Jumoke Williams
    [[A.Williams: Objectives and Literature Review]]<br/>
    2 KB (310 words) - 03:23, 20 May 2012
  • A.Williams: Objectives and Literature Review
    <h2> Objectives and Literature Review </h2>
    7 KB (1,162 words) - 07:22, 14 March 2012
  • Final Project Proposal Williams
    <h4> Literature Review </h4>
    10 KB (1,500 words) - 08:41, 14 March 2012
  • Final Project: Spatial Light Modulator Galore
    #REDIRECT [[A.Williams: Objectives and Literature Review]]
    58 B (7 words) - 14:39, 11 March 2012
  • Spring 2012:LFM Documentation
    ...llows the consumer to refocus the image before capturing a light field, to review all past photos still on the camera, and to refocus after capturing the ima
    18 KB (2,796 words) - 05:15, 18 May 2012
  • Nonlinear regression
    ==Review of linear regression==
    5 KB (774 words) - 18:07, 13 January 2014
  • Electronics Mini-Lab
    This bootcamp requires an understanding of basic circuits. If you need to review circuit concepts, start with the [[Electronics Primer]] page. If you have a
    35 KB (5,891 words) - 18:46, 7 April 2017
  • Geometrical Optics
    [[Category:Needs review]] ==Concept review==
    793 B (95 words) - 21:35, 4 June 2015
  • Error analysis
    ...l. Fortunately, there always seems to be somebody with a bigger office who needs a couch. ==Review of probability and statists concepts==
    24 KB (3,757 words) - 14:57, 3 September 2018
  • Optics Bootcamp
    For a good review of geometrical optics, ray tracing, and some worked-out ray tracing example
    28 KB (4,857 words) - 20:09, 31 July 2017
  • Estimating second order system parameters from noise power spectra using nonlinear regression
    ==Regression concepts review==
    30 KB (4,815 words) - 21:47, 27 December 2015
  • 20.109(S08):Transcript-level analysis (Day5)
    ... topic). Do your best to incorporate suggestions from the peer and faculty review.
    14 KB (2,255 words) - 16:04, 15 June 2015
  • 20.109(S08):Initiate cell culture (Day2)
    ...l-biomaterial engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    12 KB (2,006 words) - 16:04, 15 June 2015
  • 20.109(S08):Preparing cells for analysis (Day4)
    ...ab partner. Begin by reading the [[Media:PeerReviewTips.pdf| tips for peer review]] from Neal Lerner. Then, as you read your lab partner's writing, be a thou ...uggestions for improvement whenever possible. Print out two copies of your review, one to hand in and one for your lab partner.
    16 KB (2,751 words) - 16:04, 15 June 2015
  • 20.109(S08):Wrap-up analysis (Day7)
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th
    7 KB (1,208 words) - 16:04, 15 June 2015
  • 20.109(S08):DNA engineering/DNA engineering by PCR (Day 1)
    ...basic information on homologous recombination, please obtain the excellent review by Thomas Helleday from the References section of the [http://openwetware.o
    27 KB (3,752 words) - 14:24, 5 June 2015
  • 20.109(S08):DNA engineering/Clean and cut DNA (Day 2)
    ...ure of biological engineering, integrity in scientific publishing and peer review, and trends and regulation in the biotechnology industry, among others. Be
    10 KB (1,692 words) - 14:24, 5 June 2015
  • 20.109(S08):DNA engineering/Restriction map and tissue culture (Day 6)
    ... minutes) and the gel will be photographed. While you are waiting, you can review and discuss the assigned article.
    11 KB (1,738 words) - 14:24, 5 June 2015
  • 20.109(S08):Site-directed mutagenesis (Day2)
    ...ool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum this review by David Clapham in Cell], or [http://www.ncbi.nlm.nih.gov/pubmed/11830654?
    12 KB (1,954 words) - 14:24, 5 June 2015
  • 20.109(S08):Student presentations (M2D8)
    ====Review Articles (for reference only)==== ====Review Articles (for reference only)====
    9 KB (1,472 words) - 14:24, 5 June 2015
  • 20.109(S08):Lab tour
    # Review todays lab to prepare for the lab practical that you and your partner wi
    22 KB (3,631 words) - 14:24, 5 June 2015
  • 20.109(S08):Guidelines for oral presentations
    *Review each of your main messages
    5 KB (761 words) - 14:25, 5 June 2015
  • 20.109(S08):Guidelines for writing a lab report
    ...e way a journal’s editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant. Consequently, a w
    12 KB (1,912 words) - 14:25, 5 June 2015
  • 20.109(S08):Data analysis (Day7)
    ...nable titration curves by following the example of Nagai, the introduction/review of binding constants below may help contextualize your analysis.
    14 KB (2,336 words) - 14:25, 5 June 2015
  • 20.109(S07): Yeast transformation
    ...distinguish these possible explanations but it can tell you that something needs to be re-worked. ...s important work on the structure of the SAGA complex. You might find this review helpful but you are not required to read it. <br>
    19 KB (3,251 words) - 15:32, 15 June 2015
  • 20.109(S07):Lab tour
    # Review todays lab to prepare for the lab practical that you and your partner wi
    22 KB (3,724 words) - 15:32, 15 June 2015
  • 20.109(S07):Guidelines for oral presentations
    *Review each of your main messages
    4 KB (732 words) - 15:32, 15 June 2015
  • 20.109(S07):Guidelines for writing a lab report
    ...e way a journal’s editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant. Consequently, a w
    12 KB (1,849 words) - 15:32, 15 June 2015
  • Bryan Hernandez/20.109/Lab notebook/Module 2/Day 2
    ...ve&dopt=AbstractPlus&list_uids=12542690&query_hl=6&itool=pubmed_docsum the review by Vetter and LeClerc]) in FEBS 2003. <br>
    19 KB (3,069 words) - 15:48, 15 June 2015
  • 20.109(S07): Colony PCR
    ...rlVersion=0&_userid=501045&md5=b1c5e4e2f9e0094a16d7b6ac47413f7f associated review article] that was written to celebrate and highlight this important work on
    9 KB (1,466 words) - 15:32, 15 June 2015
  • 20.109(S07): Growth of phage materials
    ... bio-material engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    4 KB (600 words) - 15:32, 15 June 2015
  • 20.109(S07):Bio-material engineering/Screening library
    ... bio-material engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    9 KB (1,473 words) - 15:31, 15 June 2015
  • Bryan Hernandez/20.109/Lab notebook/Module 1/Day 2
    #Begin by looking at the primer record you wrote last time and review your planning of the myc-tag that you designed. Do the single-stranded over
    17 KB (2,960 words) - 15:31, 15 June 2015
  • 20.109(S07): Agarose gel electrophoresis
    #Begin by looking at the primer record you wrote last time and review your planning of the myc-tag that you designed. Do the single-stranded over
    15 KB (2,609 words) - 15:31, 15 June 2015
  • 20.109(S07): Start-up signal measurement
    #Review your understanding of protein structure visualization by examining another
    21 KB (3,477 words) - 15:31, 15 June 2015
  • 20.109(S07): Measuring calcium in vitro
    ...ve&dopt=AbstractPlus&list_uids=12542690&query_hl=6&itool=pubmed_docsum the review by Vetter and LeClerc]) in FEBS 2003. <br>
    20 KB (3,237 words) - 15:45, 15 June 2015
  • 20.109(S07): Lipofection
    # Review the descriptions of the lab's microscopes that we covered during [http://op
    9 KB (1,436 words) - 15:31, 15 June 2015
  • 20.109(S07): Measuring calcium in vivo
    ...]]. You will be presenting one of these articles to the class, so begin to review both the [[20.109(S07):Guidelines for oral presentations| guidelines for or
    7 KB (1,103 words) - 15:31, 15 June 2015
  • 20.109(S07): Bio-material engineering/Optimizing panning
    #To better understand how the library of plasmids was synthesized, please review the chemistry involved in joining nucleotides during DNA replication. Draw
    10 KB (1,637 words) - 15:31, 15 June 2015
  • 20.109(F07):Guidelines for writing a lab report
    ...e way a journal’s editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant. Consequently, a w
    12 KB (1,850 words) - 15:54, 15 June 2015
  • 20.109(F07):Lab tour
    # Review todays lab to prepare for the lab practical that you and your partner wi
    22 KB (3,670 words) - 15:54, 15 June 2015
  • 20.109(F07): M13.1
    ...: [http://parts.mit.edu/registry/index.php/Help:Ribosome_Binding_Site this review site] which includes some useful characterization information. <font color ... the point of the sentence hard to get"</i>). Print out two copies of your review, one to hand in and one for your lab partner. Keep your fingers crossed tha
    19 KB (3,059 words) - 16:00, 15 June 2015
  • 20.109(F07):Guidelines for oral presentations
    *Review each of your main messages
    4 KB (733 words) - 15:54, 15 June 2015
  • 20.109(F07): Genome engineering assessment
    ...ext time| a homework assignment], exchanged with your lab partner for peer review, then submitted to the teaching faculty as part of your portfolio. <b>This
    15 KB (2,532 words) - 15:54, 15 June 2015
  • 20.109(F07): Module 2 oral presentations
    ...s=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum review's abstract and pubmed link]
    11 KB (1,596 words) - 15:54, 15 June 2015
  • 20.109(F07): Growth of phage materials
    ...earch tool for finding peptides that interact with materials to meet human needs. Phage that can bind to cobalt oxide, gold, iridium and indium tin oxide ar ... bio-material engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    10 KB (1,707 words) - 15:54, 15 June 2015
  • 20.109(F08):Lab tour
    # Review todays lab to prepare for the lab practical that you and your partner wi
    26 KB (4,345 words) - 19:05, 28 July 2015
  • 20.109(F08): Mod 3 Day 7 Oral presentations
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th
    12 KB (1,972 words) - 19:05, 28 July 2015
  • 20.109(F08): Yeast transformation
    ...distinguish these possible explanations but it can tell you that something needs to be re-worked. ...s important work on the structure of the SAGA complex. You might find this review helpful but you are not required to read it. <br>
    19 KB (3,254 words) - 19:05, 28 July 2015
  • 20.109(F08):DNA engineering/Clean and cut DNA (Day 2)
    ...ure of biological engineering, integrity in scientific publishing and peer review, and trends and regulation in the biotechnology industry, among others. Be
    10 KB (1,692 words) - 19:05, 28 July 2015
  • 20.109(F08): Colony PCR
    ...rlVersion=0&_userid=501045&md5=b1c5e4e2f9e0094a16d7b6ac47413f7f associated review article] that was written to celebrate and highlight this important work on
    9 KB (1,467 words) - 19:05, 28 July 2015
  • 20.109(F08): Screen for phenotypes, isolate RNA
    Many phenotypes have been described for <i> S. cerevisiae</i>. A very fine review of these was published by [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db ...dopt=AbstractPlus&list_uids=9301019&query_hl=2&itool=pubmed_docsum Hampsey review] to familiarize yourself with the range of phenotypes that are detectable a
    21 KB (3,401 words) - 19:05, 28 July 2015
  • 20.109(F08): old announcements
    ...ue to the religious holiday and would like to meet on Friday (10.10.08) to review the material we covered, please just email me and we can set up a time. [[U
    3 KB (565 words) - 19:05, 28 July 2015
  • 20.109(F08): Mod 3 Day 1 Growth of phage materials
    ...earch tool for finding peptides that interact with materials to meet human needs. That M13 could interact with inorganic materials could not have been predi ... bio-material engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    16 KB (2,756 words) - 19:05, 28 July 2015
  • 20.109(F08):DNA engineering/DNA engineering by PCR (Day 1)
    ...basic information on homologous recombination, please obtain the excellent review by Thomas Helleday from the References section of the [http://openwetware.o
    23 KB (3,892 words) - 19:30, 28 July 2015
  • 20.109(F08):DNA engineering/Restriction map and tissue culture (Day 6)
    ... minutes) and the gel will be photographed. While you are waiting, you can review and discuss the assigned article.
    11 KB (1,738 words) - 19:05, 28 July 2015
  • 20.109(F08): Growth of phage materials
    ...earch tool for finding peptides that interact with materials to meet human needs. Phage that can bind to cobalt oxide, gold, iridium and indium tin oxide ar ... bio-material engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    10 KB (1,707 words) - 19:05, 28 July 2015
  • 20.109(F08): Mod 2 Day 4 SDS-PAGE, screen for phenotypes
    Many phenotypes have been described for <i> S. cerevisiae</i>. A very fine review of these was published by [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db ...dopt=AbstractPlus&list_uids=9301019&query_hl=2&itool=pubmed_docsum Hampsey review] to familiarize yourself with the range of phenotypes that are detectable a
    25 KB (4,068 words) - 19:05, 28 July 2015
  • 20.109(F08): Mod 1 Day 1 DNA engineering using PCR
    ...basic information on homologous recombination, please obtain the excellent review by Thomas Helleday from the References section of the [http://openwetware.o
    22 KB (3,807 words) - 19:29, 28 July 2015
  • 20.109(F08): Mod 1 Day 6 Restriction map and tissue culture
    ... minutes) and the gel will be photographed. While you are waiting, you can review and discuss the assigned article.
    11 KB (1,701 words) - 19:05, 28 July 2015
  • 20.109(F08): Mod 1 Day 7 Lipofection
    ...re)familiarize yourself with these mechanisms by (re)reading the excellent review by Thomas Helleday that you can find in the References section of the [http
    10 KB (1,701 words) - 19:05, 28 July 2015
  • 20.109(F08): Mod 2 Day 2 Yeast transformation
    ...distinguish these possible explanations but it can tell you that something needs to be re-worked. ...s important work on the structure of the SAGA complex. You might find this review helpful but you are not required to read it. <br>
    18 KB (3,152 words) - 19:06, 28 July 2015
  • 20.109(F08): Mod 2 Day 3 Colony PCR and journal article discussion
    ...csum Wu et al, published in Mol Cell in 2004]. There is also an associated review article [http://openwetware.org/wiki/PMID:_15653319 ] that was written to c
    9 KB (1,612 words) - 19:06, 28 July 2015
  • 20.109(F08):Guidelines for writing up your research
    ...e way a journal’s editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant. Consequently, a w
    12 KB (1,922 words) - 19:06, 28 July 2015
  • 20.109(F08):Guidelines for oral presentations
    *Review each of your main messages
    5 KB (761 words) - 19:06, 28 July 2015
  • 20.109(S09):Guidelines for oral presentations
    *Review each of your main messages
    5 KB (788 words) - 19:34, 28 July 2015
  • 20.109(S09):Guidelines for writing up your research
    ...e way a journals editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant. Consequently, a w
    13 KB (2,033 words) - 19:34, 28 July 2015
  • 20.109(F09): Mod 2 Day 5 Assessing re-tuned system
    ...light and dark to assess the β-gal activity associated with your mutants. Review the [[20.109(F09): Mod 2 Day 2 Measuring system performance| protocol]] tha
    17 KB (2,716 words) - 19:39, 28 July 2015
  • 20.109(S09):Site-directed mutagenesis (Day2)
    ...ool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum this review by David Clapham in Cell], or [http://www.ncbi.nlm.nih.gov/pubmed/11830654?
    13 KB (2,155 words) - 19:33, 28 July 2015
  • 20.109(S09):Data analysis (Day8)
    ...nable titration curves by following the example of Nagai, the introduction/review of binding constants below may help contextualize your analysis.
    14 KB (2,303 words) - 19:33, 28 July 2015
  • 20.109(S09): siRNA design (Day1)
    ...ssion next time. You will have 45 minutes of in-class time to complete and review your reading. As before, each pair of students will present one figure or s
    22 KB (3,613 words) - 19:33, 28 July 2015
  • 20.109(S09):Wrap-up analysis (Day7)
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th
    5 KB (904 words) - 19:33, 28 July 2015
  • 20.109(F09): Fall 2009 schedule
    | Neal/Linda visit lab for peer review exercise<br> [[Media:20.109(F09) M1D6lab.pptx| NK lab notes]], [[Media:F09_
    9 KB (1,307 words) - 19:42, 28 July 2015
  • 20.109(F09): Mod 1 Day 1 DNA engineering using PCR
    ...basic information on homologous recombination, please obtain the excellent review by Thomas Helleday from the References section of the [http://openwetware.o
    22 KB (3,783 words) - 19:44, 28 July 2015
  • 20.109(F09): Mod 3 Day 4 Battery assembly
    ...should be well on your way to your final presentations of a research idea. Review the required elements for your presentation that are noted [http://openwetw
    5 KB (921 words) - 19:38, 28 July 2015
  • 20.109(F09): Mod 1 Day 4 DNA ligations and bacterial transformations
    ...t 2 copies of this draft for next time. We will use them in lab for a peer review exercise. * Background and Significance: A concise (i.e. '''one paragraph''') review of the scientific premise that is relevant to the proposal, with emphasis o
    10 KB (1,761 words) - 19:38, 28 July 2015
  • 20.109(F09): Mod 1 Day 5 Examine candidate clones
    ...are too harsh or too obscure to be integrated into a revision. During your review, find at least one good example in the background/aims/results/plans/figure
    11 KB (1,830 words) - 19:38, 28 July 2015
  • 20.109(F09): Mod 1 Day 6 Restriction map and tissue culture
    ...l will be photographed. While the gel is running, we will engage in a peer review session around the preliminary results sections that you've all written as
    11 KB (1,830 words) - 19:38, 28 July 2015
  • 20.109(F09): Mod 1 Day 7 Lipofection
    ...re)familiarize yourself with these mechanisms by (re)reading the excellent review by Thomas Helleday that you can find in the References section of the [http
    10 KB (1,594 words) - 19:38, 28 July 2015
  • 20.109(F09):DNA engineering "Progress Report"
    * Background and Significance: A concise (i.e. '''one paragraph''') review of the scientific premise that is relevant to the proposal, with emphasis o ... be used to detect homologous recombination in mammalian cells. The reader needs to know what the goal is: which plasmid did you set out to create? Part B o
    7 KB (1,083 words) - 19:38, 28 July 2015
  • 20.109(F09):Guidelines for oral presentations
    *Review each of your main messages
    5 KB (777 words) - 19:38, 28 July 2015
  • 20.109(F09):Guidelines for writing up your research
    ...e way a journal’s editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant. Consequently, a w
    13 KB (1,951 words) - 19:38, 28 July 2015
  • 20.109(F09): Mod 3 Day 6 Oral presentations
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th
    5 KB (879 words) - 19:38, 28 July 2015
  • 20.109(F09):Lab tour
    # Review todays lab to prepare for the lab practical that you and your partner wi
    27 KB (4,508 words) - 19:38, 28 July 2015
  • 20.109(F09): Mod 2 Day 6 Readouts of DNA, Protein
    Review [[20.109(F09): Mod 2 Day 1 Testing an engineered biological system| protoco
    13 KB (2,115 words) - 19:38, 28 July 2015
  • 20.109(F09): Mod 3 Day 1 Growth of phage materials
    ...earch tool for finding peptides that interact with materials to meet human needs. That M13 could interact with inorganic materials could not have been predi ... bio-material engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    16 KB (2,666 words) - 19:38, 28 July 2015
  • 20.109(S10):Wrap-up analysis (Day7)
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th
    5 KB (919 words) - 19:49, 28 July 2015
  • 20.109(F10): Mod 2 Day 7 Readout of Protein
    ...ummary statement will be due at the end of the next module so you can also review the requirements for this assignment [http://openwetware.org/wiki/20.109(F1
    10 KB (1,613 words) - 21:00, 28 July 2015
  • 20.109(F10):DNA engineering "Progress Report"
    * Background and Significance: A concise (i.e. '''one paragraph''') review of the scientific premise that is relevant to the proposal, with emphasis o ... be used to detect homologous recombination in mammalian cells. The reader needs to know what the goal is: which plasmid did you set out to create? Part B o
    7 KB (1,131 words) - 21:00, 28 July 2015
  • 20.109(F10):Lab tour
    # Review todays lab to prepare for the lab practical that you and your partner wi
    27 KB (4,538 words) - 21:00, 28 July 2015
  • 20.109(F10):Guidelines for writing up your research
    ...e way a journal’s editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant.
    18 KB (2,793 words) - 21:00, 28 July 2015
  • 20.109(F10):Guidelines for oral presentations
    *Review each of your main messages
    5 KB (815 words) - 21:00, 28 July 2015
  • 20.109(F10): Fall 2010 schedule
    ...10) M1D6 labtalk.pdf| M1D6 lab lecture]]<br> Neal/Linda visit lab for peer review exercise<br>
    8 KB (1,189 words) - 21:00, 28 July 2015
  • 20.109(F10): Mod 1 Day 1 DNA engineering using PCR
    ...basic information on homologous recombination, please obtain the excellent review by Thomas Helleday from the References section of the [http://openwetware.o
    22 KB (3,783 words) - 21:00, 28 July 2015
  • 20.109(F10): Mod 3 Day 6 Oral presentations
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th
    5 KB (880 words) - 21:00, 28 July 2015
  • 20.109(F10): Mod 1 Day 4 DNA ligations and bacterial transformations
    ...t 2 copies of this draft for next time. We will use them in lab for a peer review exercise. * Background and Significance: A concise (i.e. '''one paragraph''') review of the scientific premise that is relevant to the proposal, with emphasis o
    11 KB (1,791 words) - 21:00, 28 July 2015
  • 20.109(F10): Mod 1 Day 5 Examine candidate clones
    ...are too harsh or too obscure to be integrated into a revision. During your review, find at least one good example in the background/aims/results/plans/figure
    11 KB (1,830 words) - 21:00, 28 July 2015
  • 20.109(S11):RNA to DNA by RT-PCR (Day5)
    ...lve patient intake of heme to inhibit the defective synthetic pathway (see review [http://www.ncbi.nlm.nih.gov/pubmed/19479318 at this link]).
    8 KB (1,243 words) - 21:05, 28 July 2015
  • 20.109(S11):Prepare DNA for cloning (Day3)
    ...s include those that regulate chemotaxis, osmoregulation, and virulence. A review of 2CS from the perspective of appropriate signal transduction &mdash; e.g.
    17 KB (2,967 words) - 21:05, 28 July 2015
  • 20.109(F10): Fall 2011 schedule
    | ? peer review exercise, or maybe lab practical on part 1<br>
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  • 20.109(F11): Mod 1 Day 1 DNA engineering using PCR
    ...basic information on homologous recombination, please obtain the excellent review by Thomas Helleday from the References section of the [http://openwetware.o
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  • 20.109(F11):DNA engineering powerpoint summary
    *a review of the science on which the recombination assay is based
    3 KB (528 words) - 21:08, 28 July 2015
  • 20.109(F11): Mod 3 Day 6 Oral presentations
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th
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  • 20.109(F11): Mod 1 Day 6 Lipofection & lab practical
    ...re)familiarize yourself with these mechanisms by (re)reading the excellent review by Thomas Helleday that you can find in the References section of the [http ...ering Module is due in just over a week. It is strongly suggested that you review the feedback you've gotten on the figures you've prepared so far and improv
    10 KB (1,541 words) - 21:08, 28 July 2015
  • 20.109(F11): System engineering research article
    *Begin this section with a 3 sentence review/overview. *a three sentence overview/review to begin this section
    7 KB (1,159 words) - 21:08, 28 July 2015
  • 20.109(F11): Mod 3 Day 4 Solar cell assembly
    ...should be well on your way to your final presentations of a research idea. Review the required elements for your presentation that are noted [http://openwetw
    5 KB (811 words) - 21:08, 28 July 2015
  • 20.109(F11): Mod 2 Day 6 Readouts of DNA, Protein
    Review the [[20.109(F11): Mod 2 Day 2 Measuring system performance| protocol]] pre
    16 KB (2,610 words) - 21:08, 28 July 2015
  • 20.109(F11): Mod 2 Day 7 Readout of Protein
    ...ummary statement will be due at the end of the next module so you can also review the requirements for this assignment [[20.109(F11):Blogging and summary tho
    10 KB (1,644 words) - 21:08, 28 July 2015
  • 20.109(F12): Mod 3 Day 1 Growth of phage materials
    ...earch tool for finding peptides that interact with materials to meet human needs. That M13 could interact with inorganic materials could not have been predi ... bio-material engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    18 KB (3,015 words) - 13:43, 29 July 2015
  • 20.109(F12): Mod 3 Day 6 Oral presentations
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th
    2 KB (345 words) - 13:43, 29 July 2015
  • 20.109(F12): Mod 3 Day 5 Solar cell testing
    #The anode needs to be coated in a layer of Surlyn (a trademarked resin from Dupont. This e ...t 300 words by midnight M3D5. Your summary statement is also almost due so review the requirements for this assignment [[20.109(F12): Reflections| here]] and
    5 KB (883 words) - 13:43, 29 July 2015
  • 20.109(S13):Site-directed mutagenesis (Day2)
    ...ool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum this review by David Clapham in Cell], or [http://www.ncbi.nlm.nih.gov/pubmed/11830654?
    13 KB (2,152 words) - 13:48, 29 July 2015
  • 20.109(S13):Testing cell viability (Day3)
    ...l/biomaterial engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    15 KB (2,447 words) - 13:48, 29 July 2015
  • 20.109(S13):Induce protein and evaluate DNA (Day5)
    ...equencing pros after your Module 1 experience, of course, but feel free to review the relevant background [[20.109%28S13%29:DNA_sequencing_and_primer_analysi
    15 KB (2,584 words) - 13:48, 29 July 2015
  • 20.109(S13): Protein engineering report
    Be sure to review the 20.109 [[20.109(S13):Statement_on_collaboration_and_integrity | stateme
    5 KB (674 words) - 13:48, 29 July 2015
  • 20.109(S13):Lab tour
    # Review todays lab to prepare for the lab practical that you and your partner wi
    27 KB (4,582 words) - 13:48, 29 July 2015
  • 20.109(S13):Assess protein function (Day8)
    ...nable titration curves by following the example of Nagai, the introduction/review of binding constants below may help contextualize your analysis.
    16 KB (2,718 words) - 13:48, 29 July 2015
  • 20.109(S13):Protein-level and wrap-up analysis (Day7)
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th
    6 KB (932 words) - 13:48, 29 July 2015
  • 20.109(S13): DNA engineering report
    Be sure to review the 20.109 [[20.109(S13):Statement_on_collaboration_and_integrity | stateme
    8 KB (1,267 words) - 13:48, 29 July 2015
  • 20.109(S13):Guidelines for oral presentations
    *Review each of your main messages
    5 KB (895 words) - 13:48, 29 July 2015
  • 20.109(S13):Module 3 oral presentations
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th
    6 KB (923 words) - 13:48, 29 July 2015
  • 20.109(S13):Guidelines for writing up your research
    ...e way a journals editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant.
    22 KB (3,317 words) - 13:48, 29 July 2015
  • 20.109(S14):Preparing cells for analysis (Day4)
    ...l/biomaterial engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f ***RLT needs to have &beta;mercaptoethanol added before use (just an aliquot, stable for
    24 KB (4,100 words) - 13:59, 29 July 2015
  • 20.109(S14):Guidelines for writing up your research
    ...e way a journals editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant.
    22 KB (3,344 words) - 13:59, 29 July 2015
  • 20.109(S14):Module 3 oral presentations
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th ..., and (2) some further elaboration/detail/citations for the instructors to review.
    14 KB (2,342 words) - 13:59, 29 July 2015
  • 20.109(F14): Mod 1 Day 6 Lipofection and CometChip Analysis
    ...re)familiarize yourself with these mechanisms by (re)reading the excellent review by Thomas Helleday that you can find in the References section of the [[20. ... induced. Think back to Agi's lecture on statistical analysis &ndash; what needs to be done to answer that question? You may find [[Media: S09_20109_M2D5-St
    14 KB (2,345 words) - 14:02, 29 July 2015
  • 20.109(F14): DNA engineering summary
    '''''You will complete this assignment individually.''''' Be sure to review the 20.109 [[20.109(F14):Statement_on_collaboration_and_integrity | stateme Be sure to review the class late policy [[20.109(F14): Assignments | ('''link''')]] as well a
    9 KB (1,410 words) - 14:02, 29 July 2015
  • 20.109(F14): Mod 1 Day 1 DNA engineering using PCR
    ...basic information on homologous recombination, please obtain the excellent review by Thomas Helleday from the References section of the [[20.109(F14):Module
    23 KB (3,882 words) - 14:02, 29 July 2015
  • 20.109(F14): Mod 1 Day 5 Examine candidate clones & tissue culture
    *Review the [[20.109(F14):Guidelines for working in the tissue culture facility| ti
    20 KB (3,455 words) - 14:02, 29 July 2015
  • 20.109(F14): Mod 1 Day 6 Lipofection and paper discussion
    ...re)familiarize yourself with these mechanisms by (re)reading the excellent review by Thomas Helleday that you can find in the References section of the [[20.
    11 KB (1,850 words) - 14:02, 29 July 2015
  • 20.109(F14):Lab tour
    # Review todays lab to prepare for the lab practical that you and your partner wi
    29 KB (4,864 words) - 14:02, 29 July 2015
  • 20.109(F14): Mod 2 Day 6 Readouts of DNA, Protein
    Review the [[20.109(F14): Mod 2 Day 2 Measuring system performance| protocol]] pre
    15 KB (2,449 words) - 14:02, 29 July 2015
  • 20.109(F14): Mod 3 Day 1 Growth of phage materials
    ...earch tool for finding peptides that interact with materials to meet human needs. That M13 could interact with inorganic materials could not have been predi ... biomaterials engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    16 KB (2,583 words) - 14:02, 29 July 2015
  • 20.109(F14): Mod 3 Day 2 Phage nanowires
    ...sted in more information about biotemplating, you may want to consult this review article: [http://cdn-pubs.acs.org/doi/abs/10.1021/cm702152a?journalCode=cm
    13 KB (2,165 words) - 14:02, 29 July 2015
  • 20.109(F14): DNA engineering methods
    You will complete this assignment individually. Please review the 20.109 [[20.109(F14):Statement on collaboration and integrity | stateme Please review the scientific writing guidelines related to methods [[20.109%28F14%29:Guid
    3 KB (408 words) - 14:02, 29 July 2015
  • 20.109(F14):Guidelines for writing up your research
    ...e way a journals editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant.
    22 KB (3,322 words) - 14:02, 29 July 2015
  • 20.109(F14):Guidelines for oral presentations
    *Review each of your main messages
    5 KB (895 words) - 14:02, 29 July 2015
  • 20.109(F14): Slides for Journal Club Presentation
    #'''review the instructions''' for giving an oral presentation, even if you will not b # '''review Atissa's instructions''' about constructing slides and draft the slides you
    3 KB (513 words) - 14:02, 29 July 2015
  • 20.109(F14):Module 3 oral presentations
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th * Read a recent review paper in an area that interests you. This approach is one of the quickest w
    14 KB (2,324 words) - 14:02, 29 July 2015
  • 20.109(F14): System engineering report
    *Begin this section with a 3 sentence review/overview. *a three sentence overview/review to begin this section
    7 KB (1,144 words) - 14:02, 29 July 2015
  • 20.109(F14): System engineering research article
    *Begin this section with a 3 sentence review/overview. *a three sentence overview/review to begin this section
    8 KB (1,258 words) - 14:02, 29 July 2015
  • 20.109(F14): Journal Club Presentations
    #'''review the guidelines''' for giving an oral presentation that are [[20.109(F14):Gu
    2 KB (409 words) - 14:02, 29 July 2015
  • 20.109(F14): Mod 1 Day 6 Lipofection
    ...re)familiarize yourself with these mechanisms by (re)reading the excellent review by Thomas Helleday that you can find in the References section of the [[20.
    14 KB (2,341 words) - 14:02, 29 July 2015
  • 20.109(S15): Mod 3 Day 1 Growth of phage materials
    ...earch tool for finding peptides that interact with materials to meet human needs. That M13 could interact with inorganic materials could not have been predi ... biomaterials engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    16 KB (2,583 words) - 17:15, 29 July 2015
  • 20.109(S15): Mod 3 Day 1 Growth of phage materials (Day 1)
    ...earch tool for finding peptides that interact with materials to meet human needs. That M13 could interact with inorganic materials could not have been predi ... biomaterials engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    16 KB (2,577 words) - 17:15, 29 July 2015
  • 20.109(S15):16S PCR and paper discussion (Day3)
    ...to via one gene (usually 16S rRNA) alone. You can learn more in the linked review papers [http://www.microbialinformaticsj.com/content/pdf/2042-5783-2-3.pdf
    22 KB (3,588 words) - 17:15, 29 July 2015
  • 20.109(S15):AIV detection assay and analysis (Day7)
    ...ngs for the AIV screening portion of this module as a Primer Design Memo. Review the [http://openwetware.org/wiki/20.109%28S15%29:Primer_design_memo guideli
    24 KB (3,931 words) - 17:15, 29 July 2015
  • 20.109(S15):Biotemplating on phage nanowires (Day 2)
    ...sted in more information about biotemplating, you may want to consult this review article: [http://dx.doi.org/10.1021/cm702152a] Sotiropoulou, Sofia, et al.
    14 KB (2,281 words) - 17:15, 29 July 2015
  • 20.109(S15):Cell preparation for DNA repair assays (Day4)
    ===Part 2: Peer Review of Methods Homework=== ...ific comments to your fellow 109er about what they have done well and what needs further work. Complete this activity using the "golden rule" -- offer the t
    18 KB (2,885 words) - 17:15, 29 July 2015
  • 20.109(S15):Diagnostic primer analysis (Day8)
    ...ngs for the AIV screening portion of this module as a Primer Design Memo. Review the [http://openwetware.org/wiki/20.109%28S15%29:Primer_design_memo guideli
    6 KB (992 words) - 17:15, 29 July 2015
  • 20.109(S15):Diagnostic primer design (Day2)
    #*Review the [http://openwetware.org/wiki/20.109%28S15%29:Guidelines_for_oral_presen
    13 KB (2,073 words) - 17:15, 29 July 2015
  • 20.109(S15):Flow cytometry and paper discussion (Day6)
    ...sh; a process that shouldn’t be rushed. To help get you started, let’s review a few key elements of DNA repair and of the NHEJ pathway in particular. ...e schematic below from the [http://www.ncbi.nlm.nih.gov/pubmed/24680220 '''review by Grundy et al.'''] highlights that many accessory molecules have their ow
    15 KB (2,568 words) - 17:15, 29 July 2015
  • 20.109(S15):Growth of phage nanowires (Day 1)
    ...earch tool for finding peptides that interact with materials to meet human needs. That M13 could interact with inorganic materials could not have been predi ... biomaterials engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    16 KB (2,579 words) - 17:15, 29 July 2015
  • 20.109(S15):Guidelines for oral presentations
    *Review each of your main messages
    5 KB (894 words) - 17:15, 29 July 2015
  • 20.109(S15):Guidelines for writing up your research
    ...e way a journals editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant.
    21 KB (3,275 words) - 17:15, 29 July 2015
  • 20.109(S15):Journal club I (Day6)
    #*Review the [http://openwetware.org/wiki/20.109%28S15%29:Guidelines_for_writing_up_
    2 KB (235 words) - 17:15, 29 July 2015
  • 20.109(S15):Lab tour
    # Review todays lab to prepare for the lab practical that you and your partner wi
    25 KB (4,176 words) - 17:15, 29 July 2015
  • 20.109(S15):Microbial DNA extraction (Day1)
    ...is described in the [http://www.ncbi.nlm.nih.gov/pubmed/15489351 '''linked review'''] by Dr. Jill Clarridge.
    15 KB (2,507 words) - 17:15, 29 July 2015
  • 20.109(S15):Microbiome data summary
    You will complete this assignment as individuals. Be sure to review the 20.109 [[20.109(S15):Statement_on_collaboration_and_integrity | '''stat Be sure to review the class late policy [[20.109%28S15%29:_Assignments#Overview | ('''link'''
    14 KB (2,270 words) - 17:15, 29 July 2015
  • 20.109(S15):NHEJ system research article
    You will complete this assignment individually. Please review the 20.109 [[20.109(S15):Statement_on_collaboration_and_integrity | '''stat ...rch#Introduction | '''funnel structure for the introduction''']], and also review the [[20.109%28S15%29:Cell_preparation_for_DNA_repair_assays_%28Day4%29#Hom
    7 KB (1,103 words) - 17:15, 29 July 2015
  • 20.109(S15):Research proposal presentation
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th * Read a recent review paper in an area that interests you. This approach is one of the quickest w
    14 KB (2,323 words) - 17:15, 29 July 2015
  • 20.109(S12):RNA to DNA by RT-PCR (Day5)
    ...lve patient intake of heme to inhibit the defective synthetic pathway (see review [http://www.ncbi.nlm.nih.gov/pubmed/19479318 at this link]).
    8 KB (1,365 words) - 17:30, 29 July 2015
  • 20.109(S12):Lab tour
    # Review todays lab to prepare for the lab practical that you and your partner wi
    27 KB (4,554 words) - 17:30, 29 July 2015
  • 20.109(S12):Site-directed mutagenesis (Day2)
    ...ool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum this review by David Clapham in Cell], or [http://www.ncbi.nlm.nih.gov/pubmed/11830654?
    13 KB (2,109 words) - 17:30, 29 July 2015
  • 20.109(S12):Induce protein and evaluate DNA (Day5)
    ...ion (through today's experiments) to be included in your research article. Review the [[20.109%28S12%29:_Protein_engineering_report | report-specific guideli
    17 KB (2,911 words) - 17:30, 29 July 2015
  • 20.109(S12):Assess protein function (Day7)
    ...nable titration curves by following the example of Nagai, the introduction/review of binding constants below may help contextualize your analysis.
    23 KB (3,809 words) - 17:30, 29 July 2015
  • 20.109(S12):Guidelines for oral presentations
    *Review each of your main messages
    5 KB (893 words) - 17:30, 29 July 2015
  • 20.109(S12): RNA engineering report
    Be sure to review the 20.109 [[20.109(S12):Statement_on_collaboration_and_integrity | stateme
    5 KB (796 words) - 17:30, 29 July 2015
  • 20.109(S12): Protein engineering report
    Be sure to review the 20.109 [[20.109(S12):Statement_on_collaboration_and_integrity | stateme
    5 KB (776 words) - 17:30, 29 July 2015
  • 20.109(S12):Module 3 oral presentations
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th
    5 KB (905 words) - 17:30, 29 July 2015
  • 20.109(S12):Initiate cell culture (Day2)
    ...l/biomaterial engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    10 KB (1,708 words) - 17:30, 29 July 2015
  • 20.109(S12):Protein-level and wrap-up analysis (Day7)
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th
    6 KB (929 words) - 17:30, 29 July 2015
  • 20.109(S12):Guidelines for writing up your research
    ...e way a journals editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant.
    21 KB (3,191 words) - 17:30, 29 July 2015
  • 20.109(F13):Module 3 oral presentations
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th * Read a recent review paper in an area that interests you. This approach is one of the quickest w
    14 KB (2,304 words) - 17:33, 29 July 2015
  • 20.109(F13):Lab tour
    # Review todays lab to prepare for the lab practical that you and your partner wi
    28 KB (4,787 words) - 17:33, 29 July 2015
  • 20.109(F13): Mod 1 Day 1 DNA engineering using PCR
    ...basic information on homologous recombination, please obtain the excellent review by Thomas Helleday from the References section of the [[20.109(F13):Module
    21 KB (3,687 words) - 17:33, 29 July 2015
  • 20.109(F13): Mod 2 Day 1 System Design
    ...11am on the day of your next lab class. Submit this assignment to Stellar. Review the submission guidelines [http://openwetware.org/wiki/20.109%28F13%29:_DNA
    26 KB (4,292 words) - 17:33, 29 July 2015
  • 20.109(F13): Mod 1 Day 5 Examine candidate clones & tissue culture
    #Review the [[20.109(F13):Guidelines for working in the tissue culture facility| ti
    17 KB (2,866 words) - 17:33, 29 July 2015
  • 20.109(F13): Mod 1 Day 6 Lipofection and paper discussion
    ...re)familiarize yourself with these mechanisms by (re)reading the excellent review by Thomas Helleday that you can find in the References section of the [[20. #*Feel free to review [[20.109%28F13%29:_DNA_engineering_summary#Logistics | Logistics -- ''Guide
    12 KB (1,875 words) - 17:33, 29 July 2015
  • 20.109(F13):Guidelines for oral presentations
    *Review each of your main messages
    5 KB (895 words) - 17:33, 29 July 2015
  • 20.109(F13): System engineering report
    You will complete this assignment individually. Please review the 20.109 [[20.109(F13):Statement_on_collaboration_and_integrity | stateme
    10 KB (1,586 words) - 17:33, 29 July 2015
  • 20.109(F13): Mod 3 Day 2 Phage nanowires
    ...sted in more information about biotemplating, you may want to consult this review article: [http://cdn-pubs.acs.org/doi/abs/10.1021/cm702152a?journalCode=cm ... biomaterials engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    15 KB (2,422 words) - 17:33, 29 July 2015
  • 20.109(F13):Guidelines for writing up your research
    ...e way a journals editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant.
    22 KB (3,319 words) - 17:33, 29 July 2015
  • 20.109(F13): DNA engineering methods
    You will complete this assignment individually. Please review the 20.109 [[20.109(F13):Statement_on_collaboration_and_integrity | stateme Please review the scientific writing guidelines related to methods [[20.109%28F13%29:Guid
    3 KB (433 words) - 17:33, 29 July 2015
  • 20.109(F13): DNA engineering summary
    You will complete this assignment in pairs. Be sure to review the 20.109 [[20.109(F13):Statement_on_collaboration_and_integrity | stateme Be sure to review the class late policy [[20.109%28F13%29:_Assignments#Overview | ('''link'''
    10 KB (1,548 words) - 17:33, 29 July 2015
  • 20.109(S10):RNA to DNA by RT-PCR (Day5)
    ...lve patient intake of heme to inhibit the defective synthetic pathway (see review [http://www.ncbi.nlm.nih.gov/pubmed/19479318 at this link]).
    7 KB (1,218 words) - 19:49, 28 July 2015
  • 20.109(S10):Site-directed mutagenesis (Day2)
    ...ool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum this review by David Clapham in Cell], or [http://www.ncbi.nlm.nih.gov/pubmed/11830654?
    13 KB (2,131 words) - 19:49, 28 July 2015
  • 20.109(S10):Lab tour
    # Review today’s lab to prepare for the lab practical that you and your partner wi
    26 KB (4,410 words) - 19:49, 28 July 2015
  • 20.109(S10):Data analysis (Day8)
    ...nable titration curves by following the example of Nagai, the introduction/review of binding constants below may help contextualize your analysis.
    15 KB (2,419 words) - 19:49, 28 July 2015
  • 20.109(S10):Guidelines for oral presentations
    *Review each of your main messages
    5 KB (788 words) - 19:49, 28 July 2015
  • 20.109(S10):Guidelines for writing up your research
    ...e way a journals editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant. Consequently, a w
    20 KB (3,083 words) - 19:49, 28 July 2015
  • 20.109(S10):Initiate cell culture (Day2)
    ...l-biomaterial engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    12 KB (1,957 words) - 19:49, 28 July 2015
  • 20.109(S11):Guidelines for oral presentations
    *Review each of your main messages
    5 KB (826 words) - 21:05, 28 July 2015
  • 20.109(S11):Guidelines for writing up your research
    ...e way a journals editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant.
    20 KB (3,142 words) - 21:05, 28 July 2015
  • 20.109(S11):Lab tour
    # Review todays lab to prepare for the lab practical that you and your partner wi
    26 KB (4,424 words) - 21:05, 28 July 2015
  • 20.109(S11):Module 3 oral presentations
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th
    5 KB (867 words) - 21:05, 28 July 2015
  • 20.109(S11): RNA engineering report
    Be sure to review the 20.109 [[20.109(S11):Statement_on_Collaboration_and_Integrity | stateme
    6 KB (1,012 words) - 21:05, 28 July 2015
  • 20.109(F12): System engineering research article
    *Begin this section with a short review/overview. *a short sentence overview/review to begin this section
    6 KB (919 words) - 13:41, 29 July 2015
  • 20.109(F12):Guidelines for oral presentations
    *Review each of your main messages
    6 KB (925 words) - 13:41, 29 July 2015
  • 20.109(F12): Oral presentation of research proposal
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th
    2 KB (345 words) - 13:41, 29 July 2015
  • 20.109(F12): Slides for Journal Club Presentation
    #'''review the instructions''' for giving an oral presentation, even if you will not b # '''review Atissa's instructions''' about constructing slides and draft the slides you
    3 KB (512 words) - 13:41, 29 July 2015
  • 20.109(F12):Guidelines for writing up your research
    ...e way a journal’s editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant.
    19 KB (3,038 words) - 13:41, 29 July 2015
  • 20.109(F12): Mod 1 Day 1 DNA engineering using PCR
    ...basic information on homologous recombination, please obtain the excellent review by Thomas Helleday from the References section of the [[20.109(F12):Module
    22 KB (3,714 words) - 13:41, 29 July 2015
  • 20.109(F12):Lab tour
    # Review todays lab to prepare for the lab certification that you will take next
    27 KB (4,585 words) - 13:41, 29 July 2015
  • 20.109(F12): M1 ppt summary and notes
    *a review of the science on which the recombination assay is based
    6 KB (922 words) - 13:41, 29 July 2015
  • 20.109(F12): Lab certifications
    ...along. Nevertheless if you want to "get ready" for the lab certifications, review your lab notes and notebooks. Use the wiki to clarify what seems cryptic. Y
    2 KB (345 words) - 13:41, 29 July 2015
  • 20.109(F12): Results and Discussion sections
    *Begin this section with a short review/overview. *a short sentence overview/review to begin this section
    3 KB (482 words) - 13:41, 29 July 2015
  • 20.109(F12): Mod 1 Day 6 Lipofection & lab practical
    ...re)familiarize yourself with these mechanisms by (re)reading the excellent review by Thomas Helleday that you can find in the References section of the [[20. ...ividually at your benches, using your notebooks as resources. You can also review the virtual labwork with the TA during this time.
    9 KB (1,495 words) - 13:41, 29 July 2015
  • 20.109(F12): Mod 3 Day 4 Solar cell assembly
    ...osals. These will be presented/turned in just one week from today! You can review the requirements for the final proposals [[20.109(F12): Oral presentation o
    5 KB (769 words) - 13:41, 29 July 2015
  • 20.109(F12): Mod 2 Day 6 Readouts of DNA, Protein
    Review the [[20.109(F12): Mod 2 Day 2 Measuring system performance| protocol]] pre
    15 KB (2,536 words) - 13:41, 29 July 2015
  • 20.109(S13):Context-setting and primer design (Day1)
    ...oridian genome in [http://www.ncbi.nlm.nih.gov/pubmed/15590811 this linked review] by Keeling and Slamovits, or about microsporidia in general at this ''PLOS ... for probing phenotype (as described for microsporidia specifically in the review by [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC130667/ Garcia]. Recently,
    21 KB (3,355 words) - 13:47, 29 July 2015
  • 20.109(S13):PCR and paper discussion (Day3)
    ...to via one gene (usually 16S rRNA) alone. You can learn more in the linked review papers [http://www.microbialinformaticsj.com/content/pdf/2042-5783-2-3.pdf
    17 KB (2,771 words) - 13:47, 29 July 2015
  • 20.109(S14):Microbial DNA extraction (Day1)
    ...is described in the [http://www.ncbi.nlm.nih.gov/pubmed/15489351 '''linked review'''] by Dr. Jill Clarridge.
    16 KB (2,542 words) - 13:58, 29 July 2015
  • 20.109(S14):Diagnostic primer design (Day2)
    ...oridian genome in [http://www.ncbi.nlm.nih.gov/pubmed/15590811 this linked review] by Keeling and Slamovits, or about microsporidia in general at this ''PLOS ... for probing phenotype, as described for microsporidia specifically in the review by [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC130667/ Garcia]. Recently,
    19 KB (3,074 words) - 13:58, 29 July 2015
  • 20.109(S14):16S PCR and paper discussion (Day3)
    ...to via one gene (usually 16S rRNA) alone. You can learn more in the linked review papers [http://www.microbialinformaticsj.com/content/pdf/2042-5783-2-3.pdf
    19 KB (3,108 words) - 13:58, 29 July 2015
  • 20.109(S14):Microbiome summary
    You will complete this assignment in pairs. Be sure to review the 20.109 [[20.109(S14):Statement_on_collaboration_and_integrity | '''stat Be sure to review the class late policy [[20.109%28S14%29:_Assignments#Overview | ('''link'''
    14 KB (2,322 words) - 13:58, 29 July 2015
  • 20.109(S14):Protein-level and wrap-up analysis (Day7)
    <i>As you can see from this image, taken from a review on hydrocarbon metabolism in marine bacteria, the alcanivorax species is th ..., and (2) some further elaboration/detail/citations for the instructors to review.
    6 KB (1,026 words) - 13:58, 29 July 2015
  • 20.109(S14):Guidelines for oral presentations
    *Review each of your main messages
    6 KB (917 words) - 13:58, 29 July 2015
  • 20.109(S14):Lab tour
    # Review todays lab to prepare for the lab practical that you and your partner wi
    28 KB (4,689 words) - 13:59, 29 July 2015
  • 20.109(S14):Begin Western protein analysis (Day2)
    ...ill store these samples for you at -80 &deg;C in case another Western blot needs to be completed. ...ung cancer. You do NOT need to make a figure this time, but you DO need to review the guiding questions in the Day 3 protocol and be ready to participate in
    16 KB (2,680 words) - 13:59, 29 July 2015
  • 20.109(S14):Data analysis (Day7)
    ...sh; a process that shouldn’t be rushed. To help get you started, let’s review a few key elements of DNA repair and of the NHEJ pathway in particular. ...e schematic below from the [http://www.ncbi.nlm.nih.gov/pubmed/24680220 '''review by Grundy et al.'''] highlights that many accessory molecules have their ow
    16 KB (2,686 words) - 13:59, 29 July 2015
  • 20.109(S14):Testing cell viability (Day3)
    ...l/biomaterial engineering. During lab next time, you and your partner will review the topics and narrow your choices, identifying one or perhaps two topics f
    15 KB (2,507 words) - 13:59, 29 July 2015
  • 20.109(S14):NHEJ system research article
    You will complete this assignment individually. Please review the 20.109 [[20.109(S14):Statement_on_collaboration_and_integrity | '''stat ...rch#Introduction | '''funnel structure for the introduction''']], and also review the [[20.109%28S14%29:DNA_repair_assays%28Day6%29#For_next_time | '''specif
    7 KB (1,028 words) - 13:59, 29 July 2015
  • 20.309 Main Page
    * [[Complex Number Review|Complex number review]] * [[Complex Number Review|Complex number review]]
    8 KB (887 words) - 20:47, 16 October 2020
  • Review of probability concepts
    ==Probability review== This quick review of probability concepts is a work in progress.
    7 KB (1,214 words) - 21:12, 31 January 2019
  • 20.109(F15):Evaluate mutations and site-directed mutagenesis (Day1)
    ...ool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum this review by David Clapham in Cell], or [http://www.ncbi.nlm.nih.gov/pubmed/11830654?
    28 KB (4,525 words) - 14:45, 12 November 2015
  • 20.109(F15):Site-directed mutagenesis (Day2)
    ...ool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum this review by David Clapham in Cell], or [http://www.ncbi.nlm.nih.gov/pubmed/11830654?
    14 KB (2,182 words) - 11:40, 4 September 2015
  • 20.109(F15): DNA engineering methods
    You will complete this assignment individually. Please review the 20.109 [[20.109(F15):Statement on collaboration and integrity | stateme Please review the scientific writing guidelines related to methods [[20.109%28F15%29:Guid
    3 KB (408 words) - 11:40, 4 September 2015
  • 20.109(F15):Assess protein function (Day7)
    ...nable titration curves by following the example of Nagai, the introduction/review of binding constants below may help contextualize your analysis.
    15 KB (2,549 words) - 00:24, 3 November 2015
  • 20.109(F15):DNA engineering using PCR (Day1)
    ...r basic information on homologous recombination, please read the excellent review by Thomas Helleday from the References section of the [[20.109(F15):Module
    21 KB (3,638 words) - 13:47, 2 October 2015
  • 20.109(F15):Guidelines for writing up your research
    ...e way a journal’s editor decides whether to send your paper out for peer review or reject it as uninteresting and not generally relevant.
    21 KB (3,266 words) - 11:40, 4 September 2015
  • 20.109(F15):Lipofection (Day6)
    ...re)familiarize yourself with these mechanisms by (re)reading the excellent review by Thomas Helleday that you can find in the References section of the [[20.
    16 KB (2,572 words) - 17:58, 1 October 2015
  • 20.109(F15):Guidelines for oral presentations
    *Review each of your main “messages”
    5 KB (896 words) - 11:40, 4 September 2015

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