Difference between revisions of "20.109(S22):Spring 2022 schedule"

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| [[20.109(S22):M1D5 |Placeholder]] <br>  
 
| [[20.109(S22):M1D5 |Placeholder]] <br>  
 
| [[20.109(S22):Homework#Due_M1D5|Homework due]]
 
| [[20.109(S22):Homework#Due_M1D5|Homework due]]
|--
 
|
 
| <font color = 999999>T/W Feb 22/23 </font color>
 
|
 
| <font color = #91b391>'''Presidents' Day holiday'''</font color>
 
|
 
 
|--
 
|--
 
| M1D6
 
| M1D6
Line 91: Line 85:
 
|--
 
|--
 
| M2D2
 
| M2D2
| R/F Mar 25/26
+
| T/W Mar 8/9
| [http://be.mit.edu/directory/angela-koehler AK] <br> [[Media:20109 M2L2 2021.pdf|Slides]]
+
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>  
| [[20.109(S21):M2D2 |Assess purity and concentration of purified protein ]] <br> [[Media:Sp21 M2D2 bcm marked.pdf | T/R Prelab]] <br> [https://www.dropbox.com/sh/khcxnq9fyo68gvt/AACYdN42VVwvZ4WLUyp743_Na?dl=0 W/F prelab]
+
| [[20.109(S22):M2D2 |Placeholder]] <br>  
| [[20.109(S21):Homework#Due_M2D2| Homework due]] <br> [[20.109(S21):Mini-presentation| <font color =  #b3251c>'''Mini-presentation due'''</font color>]] Sun, Mar 28 at 10 pm <br>[http://app.slack.com/client/T01KU1VLZQB/C01KQNPD3UM Blog post due] Mon, Mar 29 at 10 pm
+
| [[20.109(S22):Homework#Due_M2D2| Homework due]] <br> [[20.109(S22):Mini-presentation| <font color =  #b3251c>'''Mini-presentation due'''</font color>]] XX at 10 pm <br>[ Blog post due] XX at 10 pm
 
|--
 
|--
 
| M2D3
 
| M2D3
| T/W Mar 30/31
+
| R/F Mar 10/11
| [http://be.mit.edu/directory/angela-koehler AK] <br> [[Media:20109 M2L3 2021.pdf|Slides]]
+
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>  
| [[20.109(S21):M2D3 |Prepare and scan small molecule microarray (SMM) slides]] <br> [[Media:Sp21 M2D3 bcm marked.pdf | T/R Prelab]] <br> [https://www.dropbox.com/sh/khcxnq9fyo68gvt/AACYdN42VVwvZ4WLUyp743_Na?dl=0 W/F prelab]
+
| [[20.109(S22):M2D3 |Placeholder]] <br>  
| [[20.109(S21):Homework#Due_M2D3|Homework due]]
+
| [[20.109(S22):Homework#Due_M2D3|Homework due]]
 
|--
 
|--
 
| M2D4
 
| M2D4
| R/F Apr 1/2
+
| T/W Mar 15/16
| [http://be.mit.edu/directory/angela-koehler AK] <br> [[Media:20109 M2L4 2021.pdf|Slides]]
+
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>  
| [[20.109(S21):M2D4 |Analyze SMM data to identify putative small molecule binders]] <br> [[Media:Sp21 M2D4 bcm marked.pdf | T/R Prelab]] <br> [https://www.dropbox.com/sh/khcxnq9fyo68gvt/AACYdN42VVwvZ4WLUyp743_Na?dl=0 W/F prelab]
+
| [[20.109(S22):M2D4 |Placeholder]] <br>  
| <font color= #819081 >'''Laboratory quiz'''</font color> <br> [[20.109(S21):Homework#Due_M2D4|Homework due]]<br>[[20.109(S21):Data Summary| <font color =  #b3251c>'''Data Summary revision due'''</font color>]] Sun, Apr 4 at 10 pm <br>
+
| <font color= #819081 >'''Laboratory quiz'''</font color> <br> [[20.109(S22):Homework#Due_M2D4|Homework due]]<br>[[20.109(S22):Data Summary| <font color =  #b3251c>'''Data Summary revision due'''</font color>]] XX at 10 pm <br>
 +
|--
 +
| M2D5
 +
| R/F Mar 17/18
 +
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>
 +
| [[20.109(S22):M2D5 |Placeholder]] <br>
 +
| [[20.109(S22):Homework#Due_M2D5|Homework due]]
 
|--
 
|--
 
|  
 
|  
| T/W Apr 6/7
+
| <font color = 999999>T/W Mar 22/23 </font color>
 
|  
 
|  
| [[20.109(S21):Journal club presentation| <font color = #b3251c>'''Journal club presentations'''</font color>]]
+
| <font color = #0d368e>'''Spring break'''</font color>
 
|  
 
|  
 
|--
 
|--
 
|  
 
|  
| R/F Apr 8/9
+
| <font color = 999999>R/F Mar 24/25 </font color>
 +
|
 +
| <font color = #0d368e>'''Spring break'''</font color>
 
|  
 
|  
| [[20.109(S21):Journal club presentation| <font color =  #b3251c>'''Journal club presentations'''</font color>]]
 
| [http://app.slack.com/client/T01KU1VLZQB/C01KQNPD3UM Blog post due] Sat, Apr 10 at 10 pm
 
|--
 
| M2D5
 
| T/W Apr 13/14
 
| [http://be.mit.edu/directory/angela-koehler AK] <br> [[Media:20109 M2L5 2021.pdf|Slides]]<br> AI articles linked: [[Media:S41587-020-0418-2.pdf|here]] and [[Media:S41587-020-0417-3.pdf|here]]
 
| [[20.109(S21):M2D5 |Learn best practices for mammalian cell culture ]] <br> [[Media:Sp21 M2D5 bcm marked.pdf | T/R Prelab]]<br> [[Media:Sp21_M2D5_lmm.pdf| W/F Prelab]]
 
| [[20.109(S21):Homework#Due_M2D5|Homework due]]<br>
 
|--
 
| M2D6
 
| R/F Apr 15/16
 
| [http://be.mit.edu/directory/angela-koehler AK] <br> [[Media:20109 M2L6 2021.pdf|Slides]]
 
| [[20.109(S21):M2D6 |Utilize cellular thermal shift assay (CETSA) to test putative small molecule binders]] <br> [[Media:Sp21 M2D6 JCH update.pdf| T/R Prelab]]<br> [[Media:Sp21 M2D6 lmm.pdf| W/F Prelab]]
 
| [[20.109(S21):Homework#Due_M2D6|Homework due]]<br>
 
 
|--
 
|--
 
|  
 
|  
| <font color = 999999>T/W Apr 20/21 </font color>
+
| T/W Mar 29/30
 
|  
 
|  
| <font color = #0d368e>'''Student holiday'''</font color>
+
| [[20.109(S21):Journal club presentation| <font color = #b3251c>'''Journal club presentations'''</font color>]]
 
|  
 
|  
 +
|--
 +
|
 +
| R/F Mar/Apr 31/1
 +
|
 +
| [[20.109(S21):Journal club presentation| <font color =  #b3251c>'''Journal club presentations'''</font color>]]
 +
| [ Blog post due] XX at 10 pm
 +
|--
 +
| M2D6
 +
| T/W Apr 5/6
 +
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>
 +
| [[20.109(S22):M2D6 |Placeholder]] <br>
 +
| [[20.109(S22):Homework#Due_M2D6|Homework due]]<br>
 
|--
 
|--
 
| M2D7
 
| M2D7
| R/F Apr 22/23
+
| R/F Apr 7/8
| [http://be.mit.edu/directory/angela-koehler AK] <br> [[Media:20109 M2L7 2021.pdf|Slides]]
+
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>  
| [[20.109(S21):M2D7 |Complete CETSA experiment and analyze data]] <br> [[Media:Sp21 M2D7 bcm marked.pdf| T/R Prelab]]<br> [[Media:Sp21_M2D7_lmm.pdf | W/F Prelab]]
+
| [[20.109(S22):M2D7 |Placeholder]] <br>  
| <font color= #819081 >'''Laboratory quiz'''</font color> <br> [[20.109(S21):Homework#Due_M2D7|Homework due]]<br>
+
| <font color= #819081 >'''Laboratory quiz'''</font color> <br> [[20.109(S22):Homework#Due_M2D7|Homework due]]<br>
 
|--
 
|--
 
| colspan="6" |
 
| colspan="6" |
 
|--
 
|--
 
| M3D1
 
| M3D1
| T/W Apr 27/28
+
| T/W Apr 12/13
| [http://be.mit.edu/directory/alan-p-jasanoff AJ] <br> [[Media:2021 lect1 overview nomovies.pptx|Slides]]
+
| [??] <br>  
| [[20.109(S21):M3D1 |Review IPC literature and examine structural characteristics]] <br> [[Media:Sp21 M3D1 bcm marked.pdf| T/R Prelab]]<br> [[Media:Sp21_M3D1_lmm.pdf | W/F Prelab]]
+
| [[20.109(S22):M3D1 |Placeholder]] <br>
| [[20.109(S21):Homework#Due_M3D1|Homework due]] <br>
+
| [[20.109(S22):Homework#Due_M3D1|Homework due]] <br>
 
|--
 
|--
 
| M3D2
 
| M3D2
| R/F Apr 29/30
+
| R/F Apr 14/15
| [http://be.mit.edu/directory/alan-p-jasanoff AJ]<br> [[Media:2021 lect2 rationaldesign.pptx|Slides]]
+
| [??]<br>  
| [[20.109(S21):M3D2 |Identify IPC mutations]] <br> [[Media:Sp21 M3D2 bcm marked.pdf| T/R prelab]]<br> [[Media:Sp21_M3D2_CP.pdf| W/F prelab]]
+
| [[20.109(S22):M3D2 |Placeholder]] <br>  
| [[20.109(S21):Homework#Due_M3D2|Homework due]] <br> [[20.109(S21):Research article| <font color =  #b3251c>'''Research article due'''</font color>]]  Sun, May 2 at 10 pm <br> [http://app.slack.com/client/T01KU1VLZQB/C01KQNPD3UM Blog post due] Mon, May 3 at 10 pm
+
| [[20.109(S22):Homework#Due_M3D2|Homework due]] <br> [[20.109(S22):Research article| <font color =  #b3251c>'''Research article due'''</font color>]]  XX at 10 pm <br> [ Blog post due] XX at 10 pm
 
|--
 
|--
| M3D3
 
| T/W May 4/5
 
| [http://be.mit.edu/directory/alan-p-jasanoff AJ] <br> [[Media:2021 lect3 binding.pptx|Slides]]
 
| [[20.109(S21):M3D3 |Evaluate effect of mutations on IPC variants ]] <br> [[media:Sp21 M3D3 bcm marked.pdf| T/R prelab]] <br> [[media:Sp21_M3D3_lmm.pdf| W/F prelab]]
 
| [[20.109(S21):Homework#Due_M3D3|Homework due]]<br>
 
|--
 
 
|  
 
|  
| R/F May 6/7
+
| <font color = 999999>T/W Apr 19/20 </font color>
| Research proposal pitches <br>  
+
|  
| [[Develop Research proposal ideas and presentations|Develop Research proposal ideas and presentations]] <br> [[Media:Sp21 Societal M3D4 HW ex.pdf| Prompts for discussion/homework]]
+
| <font color = #0d368e>'''Patriots' Day holiday'''</font color>
|
+
|  
 
|--
 
|--
 +
| M3D3
 +
| R/F Apr 21/22
 +
| [??] <br>
 +
| [[20.109(S22):M3D3 |Placeholder ]] <br>
 +
| [[20.109(S22):Homework#Due_M3D3|Homework due]]<br>
 +
|--
 
| M3D4
 
| M3D4
| T/W May 11/12
+
| T/W May Apr 25/27
| [http://be.mit.edu/directory/alan-p-jasanoff AJ] <br> [[Media:2021 lect4 fluorescence.pptx|Slides]]
+
| [??] <br>  
| [[20.109(S21):M3D4 |Design new IPC variant ]] <br> [[Media:Sp21 M3D4 bcm.pdf| T/R prelab]]<br> [[Media:Sp21_M3D4_lmm.pdf | W/F prelab]]
+
| [[20.109(S22):M3D4 |Placeholder ]] <br>  
| <font color= #d1b217 >'''Laboratory quiz''' <br>[[20.109(S21):Homework#Due_M3D5|Homework due]]
+
| [[20.109(S22):Homework#Due_M3D4|Homework due]]<br>
 
|--
 
|--
 +
| M3D5
 +
| R/F Apr 28/29
 +
| [??] <br>
 +
| [[20.109(S22):M3D5 |Placeholder]] <br>
 +
| [[20.109(S22):Homework#Due_M3D5|Homework due]]
 +
|--
 +
|
 +
| T/W May 3/4
 +
| [??] <br>
 
|  
 
|  
| R/F May 13/14
 
| [http://be.mit.edu/directory/alan-p-jasanoff AJ] <br> [[Media:2021 lect5 screening.pptx|Slides]]
 
| [[20.109(S21):Mini-report | <font color =  #b3251c>'''Mini-report due'''</font color>]] by 10 pm
 
 
|  
 
|  
 
|--
 
|--
 
|  
 
|  
| T/W May 18/19
+
| R/F May 5/6
 
|  
 
|  
| [[20.109(S21):Research proposal presentation| <font color =  #b3251c>'''Research proposal presentations'''</font color>]]
+
| [[20.109(S22):Research proposal presentation| <font color =  #b3251c>'''Research proposal presentations'''</font color>]]
| [http://app.slack.com/client/T01KU1VLZQB/C01KQNPD3UM Blog post due] Thu, May 20 at 10 pm
+
| [ Blog post due] XX at 10 pm
 
|--
 
|--
 
| colspan="6" |
 
| colspan="6" |
 
|--
 
|--
 
|  
 
|  
| R May 20
+
| T May 10
 
| <font color =  #0d368e>'''Feedback session'''</font color> <br>
 
| <font color =  #0d368e>'''Feedback session'''</font color> <br>
 
|   
 
|   

Revision as of 17:22, 5 January 2022

20.109(S22): Laboratory Fundamentals of Biological Engineering

Sp17 20.109 M1D7 chemical structure features.png

Spring 2022 schedule        FYI        Assignments        Homework        Class data        Communication        Accessibility

       M1: Drug discovery        M2: Metabolic engineering        M3: Project design       


Welcome to 20.109! It is our goal to make this class a useful and fun introduction to the experiments and techniques used in biological engineering. Though there is not enough time to show you everything needed to do research, after this class you will feel confident and familiar with some fundamental experimental approaches and laboratory protocols. You will develop good habits at the bench, which will increase the likelihood of success in your work and ensure the health and safety of you and your labmates. By the end of the semester, you will also be well-versed in good scientific practices - through your experience with scientific writing, notebook keeping, and orally presenting data and novel ideas. All of us involved in teaching 20.109 hope you will find it a satisfying challenge and an exciting experience that has lasting value.

SCHEDULE DETAILS:
Lecture times: Tuesday (T) and Thursday (R) 11 - 12 pm in 16-220
Laboratory section times: Tuesday (T) and Thursday (R) 1 - 5 pm or Wednesday (W) and Friday (F) 1 - 5 pm in 56-322

ABSENCE POLICY:
Absences from lecture: Attendance will be recorded for participation points throughout the semester. If absent, student is responsible for all information provided in lecture.
Absences from laboratory: Excused absences should be discussed with the Instructors as soon as possible. Because make-up laboratory time is not provided, attendance in another section may be required to complete the necessary experiments. Unexcused absences will result in a 1/3 of a letter grade deduction from the final grade on the major assignment for the module (for example, a B+ would become a B).

MODULE DATE LECTURER LABORATORY EXPERIMENTS ASSIGNMENTS
T/W Feb 1/2 NLL
Slides
Orientation and laboratory tour
M1D1 R/F Feb 3/4 [AK]
Slides
Placeholder
Orientation quiz
Homework due
M1D2 T/W Feb 8/9 [AK]
Placeholder
Homework due
M1D3 R/F Feb 10/11 [AK]
Placeholder
Homework due
M1D4 T/W Feb 15/16 [AK]
Placeholder
Laboratory quiz
Homework due
M1D5 R/F Feb 17/18 [AK]
Placeholder
Homework due
M1D6 R/F Feb 24/25 [AK]
Placeholder
Homework due
M1D7 T/W Mar 1/2 [AK]
Placeholder
Laboratory quiz
Homework due
M2D1 R/F Mar 3/4 NLL
Placeholder
Homework due
T/W Mar 23/24 Student holiday Data Summary draft due Wed, Mar 24 at 10 pm
M2D2 T/W Mar 8/9 NLL
Placeholder
Homework due
Mini-presentation due XX at 10 pm
[ Blog post due] XX at 10 pm
M2D3 R/F Mar 10/11 NLL
Placeholder
Homework due
M2D4 T/W Mar 15/16 NLL
Placeholder
Laboratory quiz
Homework due
Data Summary revision due XX at 10 pm
M2D5 R/F Mar 17/18 NLL
Placeholder
Homework due
T/W Mar 22/23 Spring break
R/F Mar 24/25 Spring break
T/W Mar 29/30 Journal club presentations
R/F Mar/Apr 31/1 Journal club presentations [ Blog post due] XX at 10 pm
M2D6 T/W Apr 5/6 NLL
Placeholder
Homework due
M2D7 R/F Apr 7/8 NLL
Placeholder
Laboratory quiz
Homework due
M3D1 T/W Apr 12/13 [??]
Placeholder
Homework due
M3D2 R/F Apr 14/15 [??]
Placeholder
Homework due
Research article due XX at 10 pm
[ Blog post due] XX at 10 pm
T/W Apr 19/20 Patriots' Day holiday
M3D3 R/F Apr 21/22 [??]
Placeholder
Homework due
M3D4 T/W May Apr 25/27 [??]
Placeholder
Homework due
M3D5 R/F Apr 28/29 [??]
Placeholder
Homework due
T/W May 3/4 [??]
R/F May 5/6 Research proposal presentations [ Blog post due] XX at 10 pm
T May 10 Feedback session