Difference between revisions of "20.109(F09): Fall 2009 schedule"

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|  
 
|  
 
| Thur Sept 10   
 
| Thur Sept 10   
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
 
|  
 
|  
 
| [[20.109(F09):Lab tour | Orientation]]
 
| [[20.109(F09):Lab tour | Orientation]]
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| Tue Sept 15  
 
| Tue Sept 15  
 
| [http://web.mit.edu/be/people/engelward.htm BE]
 
| [http://web.mit.edu/be/people/engelward.htm BE]
−
| [[User:Michelle R. Sukup Jackson| MSJ]]
+
| [http://openwetware.org/wiki/User:Michelle_R._Sukup_Jackson | MSJ]
 
| [[20.109(F09): Mod 1 Day 1 DNA engineering using PCR | DNA engineering using PCR]]
 
| [[20.109(F09): Mod 1 Day 1 DNA engineering using PCR | DNA engineering using PCR]]
−
| [[Media:BE109 Fall09 Mod1 Day1 Lecture FINAL.ps| Lecture Handout]]<br>
+
| Lecture Handout<br>
 
[[Media:NKlab M1D1.pptx| NK lab notes]], [[Media:F09_M1D1-ANS.pdf | ANS lab notes]]
 
[[Media:NKlab M1D1.pptx| NK lab notes]], [[Media:F09_M1D1-ANS.pdf | ANS lab notes]]
 
|--
 
|--
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| Thur Sept 17   
 
| Thur Sept 17   
 
| [http://web.mit.edu/be/people/engelward.htm BE]
 
| [http://web.mit.edu/be/people/engelward.htm BE]
−
| [[User:Michelle R. Sukup Jackson| MSJ]]
+
| [http://openwetware.org/wiki/User:Michelle_R._Sukup_Jackson | MSJ]
 
| [[20.109(F09): Mod 1 Day 2 Clean and cut DNA | Clean and cut DNA]]
 
| [[20.109(F09): Mod 1 Day 2 Clean and cut DNA | Clean and cut DNA]]
 
| Neal/Linda/Atissa visit lab<br>
 
| Neal/Linda/Atissa visit lab<br>
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| Tue Sept 22   
 
| Tue Sept 22   
 
| [http://web.mit.edu/be/people/engelward.htm BE]
 
| [http://web.mit.edu/be/people/engelward.htm BE]
−
| [[User:Michelle R. Sukup Jackson| MSJ]]
+
| [http://openwetware.org/wiki/User:Michelle_R._Sukup_Jackson | MSJ]
 
| [[20.109(F09): Mod 1 Day 3 Agarose gel electrophoresis| Agarose gel electrophoresis]]
 
| [[20.109(F09): Mod 1 Day 3 Agarose gel electrophoresis| Agarose gel electrophoresis]]
−
| [[Media:20.109(F09) M1D3lab.pptx| NK lab notes]], [[Media:BE109 Fall09 Mod1 Day3 Lecture To Post.pdf|Lecture Handout]]
+
| [[Media:20.109(F09) M1D3lab.pptx| NK lab notes]], [[Media:F09_M1D3-ANS.pdf | ANS lab notes]], [[Media:BE109 Fall09 Mod1 Day3 Lecture To Post.pdf|Lecture Handout]]
  
 
|--
 
|--
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| Thur Sept 24   
 
| Thur Sept 24   
 
| [http://web.mit.edu/be/people/engelward.htm BE]
 
| [http://web.mit.edu/be/people/engelward.htm BE]
−
| [[User:Michelle R. Sukup Jackson| MSJ]]
+
| [http://openwetware.org/wiki/User:Michelle_R._Sukup_Jackson | MSJ]
 
| [[20.109(F09): Mod 1 Day 4 DNA ligations and bacterial transformations| DNA ligation and bacterial transformation]]
 
| [[20.109(F09): Mod 1 Day 4 DNA ligations and bacterial transformations| DNA ligation and bacterial transformation]]
−
|  
+
| [[Media:20.109(F09) M1D4lab.pptx| NK lab notes]], [[Media:F09_M1D4-ANS.pdf | ANS lab notes]], [[Media:BE109 Fall09 Mod1 Day4 Lecture to post.pdf | Lecture Handout]]
 +
 
 
|--
 
|--
 
| 1
 
| 1
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| Tue Sept 29  
 
| Tue Sept 29  
 
| [http://web.mit.edu/be/people/engelward.htm BE]
 
| [http://web.mit.edu/be/people/engelward.htm BE]
−
| [[User:Michelle R. Sukup Jackson| MSJ]]
+
| [http://openwetware.org/wiki/User:Michelle_R._Sukup_Jackson | MSJ]
 
| [[20.109(F09): Mod 1 Day 5 Examine candidate clones| Examine candidate clones]]
 
| [[20.109(F09): Mod 1 Day 5 Examine candidate clones| Examine candidate clones]]
−
| Christine from EHS visits lab
+
| Christine from EHS visits lab<br>
 +
[[Media:20.109(F09) M1D5lab.pptx| NK lab notes]], [[Media:F09_M1D5-ANS.pdf | ANS lab notes]], [[Media:BE109 Fall09 Mod1 Day5 Lecture fin To Post.pdf | Lecture Handout]]
 
|--
 
|--
 
| 1
 
| 1
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| Thur Oct 1  
 
| Thur Oct 1  
 
| [http://web.mit.edu/be/people/engelward.htm BE]
 
| [http://web.mit.edu/be/people/engelward.htm BE]
−
| [[User:Michelle R. Sukup Jackson| MSJ]]
+
| [http://openwetware.org/wiki/User:Michelle_R._Sukup_Jackson | MSJ]
 
| [[20.109(F09): Mod 1 Day 6 Restriction map and tissue culture | Restriction map and tissue culture]]
 
| [[20.109(F09): Mod 1 Day 6 Restriction map and tissue culture | Restriction map and tissue culture]]
−
| Neal/Linda visit lab for peer review exercise
+
| Neal/Linda visit lab for peer review exercise<br> [[Media:20.109(F09) M1D6lab.pptx| NK lab notes]], [[Media:F09_M1D6-ANS.pdf | ANS lab notes]], [[Media:BE109 Fall09 Mod1 Day6 to POST.pdf | Lecture notes]], [[Media:Statistics for 109.pptx | Michelle's Stats for TR lab]]
 +
 
 
|--
 
|--
 
| 1
 
| 1
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| Tue Oct 6  
 
| Tue Oct 6  
 
| [http://web.mit.edu/be/people/engelward.htm BE]
 
| [http://web.mit.edu/be/people/engelward.htm BE]
−
| [[User:Michelle R. Sukup Jackson| MSJ]]
+
| [http://openwetware.org/wiki/User:Michelle_R._Sukup_Jackson | MSJ]
 
| [[20.109(F09): Mod 1 Day 7 Lipofection| Lipofection]]
 
| [[20.109(F09): Mod 1 Day 7 Lipofection| Lipofection]]
−
| [[20.109(F09):DNA engineering "Progress Report"| Mod 1 "progress report"]] due by 11AM on the day you have lab
+
| [[20.109(F09):DNA engineering "Progress Report"| Mod 1 "progress report"]] due by 11AM on the day you have lab<br>
 +
[[Media:20.109(F09) M1D7lab.pdf| NK lab notes]], [[Media:F09_M1D7-ANS.pdf | ANS lab notes]], [[Media:BE109 Fall09 Mod1 Day7 to POST.pdf | Lecture notes]]
 
|--
 
|--
 
| 1
 
| 1
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| Thur Oct 8   
 
| Thur Oct 8   
 
| [http://web.mit.edu/be/people/engelward.htm BE]
 
| [http://web.mit.edu/be/people/engelward.htm BE]
−
| [[User:Michelle R. Sukup Jackson| MSJ]]
+
| [http://openwetware.org/wiki/User:Michelle_R._Sukup_Jackson | MSJ]
 
| [[20.109(F09): Mod 1 Day 8 FACS analysis| FACS analysis]]
 
| [[20.109(F09): Mod 1 Day 8 FACS analysis| FACS analysis]]
−
|  
+
| [[Media:BE109 Fall09 Mod1 Day8 to POST.pdf | Lecture notes]]
 
|--
 
|--
 
| colspan="7" |
 
| colspan="7" |
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| 1
 
| 1
 
| Thurs Oct 15  
 
| Thurs Oct 15  
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[User:Tyler Dewitt| TD]]
+
| [http://openwetware.org/wiki/User:Tyler_Dewitt | TD]
 
| [[20.109(F09): Mod 2 Day 1 Testing an engineered biological system| Testing an engineered biological system]]
 
| [[20.109(F09): Mod 2 Day 1 Testing an engineered biological system| Testing an engineered biological system]]
−
| [[20.109(F09):DNA engineering "Memo"| Mod 1 "memo"]] is due by 11AM on the day you have lab
+
| [[20.109(F09):DNA engineering "Memo"| Mod 1 "memo"]] is due by 11AM on the day you have lab <br> [[Media:20.109(F09) lectureM2D1 handout.pdf| M2D1 lecture handout]]<br>[[Media:20.109(F09) M2D1 labpix.pptx| NK lab notes]], [[Media:F09_M2D1-ANS.pdf | ANS lab notes]]
 
|--
 
|--
 
| 2
 
| 2
 
| 2
 
| 2
 
| Tues Oct 20  
 
| Tues Oct 20  
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[User:Tyler Dewitt| TD]]
+
| [http://openwetware.org/wiki/User:Tyler_Dewitt | TD]
 
| [[20.109(F09): Mod 2 Day 2 Measuring system performance | Measuring System Performance]]
 
| [[20.109(F09): Mod 2 Day 2 Measuring system performance | Measuring System Performance]]
−
|  
+
| [[Media:20.109(F09) M2D2 Handout.pdf| M2D2 lecture handout]]<br>[[Media:20.109(F09) M2D2 labpix.pptx| NK lab notes]], [[Media:F09_M2D2-ANS.pdf | ANS lab notes]]
 
|--
 
|--
 
| 2
 
| 2
 
| 3
 
| 3
 
| Thurs Oct 22  
 
| Thurs Oct 22  
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[User:Tyler Dewitt| TD]]
+
| [http://openwetware.org/wiki/User:Tyler_Dewitt | TD]
 
| [[20.109(F09): Mod 2 Day 3 Tools for system engineering | Tools for System Engineering]]
 
| [[20.109(F09): Mod 2 Day 3 Tools for system engineering | Tools for System Engineering]]
−
|  
+
| [[Media:20.109(F09) M2D3 handout.pdf| M2D3 lecture handout]]<br> [[Media:20.109(F09) M2D3 labpix.pptx| NK lab notes]], [[Media:F09_M2D3-ANS.pdf | ANS lab notes]]
 
|--
 
|--
 
| 2
 
| 2
 
| 4
 
| 4
 
| Tues Oct 27
 
| Tues Oct 27
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[User:Tyler Dewitt| TD]]
+
| [http://openwetware.org/wiki/User:Tyler_Dewitt | TD]
 
| [[20.109(F09): Journal Club I| Journal Club I]]
 
| [[20.109(F09): Journal Club I| Journal Club I]]
 
| We'll be starting and ending this day in the lab so meet in 56-322
 
| We'll be starting and ending this day in the lab so meet in 56-322
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| 5
 
| 5
 
| Thurs Oct 29
 
| Thurs Oct 29
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[User:Tyler Dewitt| TD]]
+
| [http://openwetware.org/wiki/User:Tyler_Dewitt | TD]
 
| [[20.109(F09): Mod 2 Day 5 Assessing re-tuned system | Assessing re-tuned system]]
 
| [[20.109(F09): Mod 2 Day 5 Assessing re-tuned system | Assessing re-tuned system]]
−
|  
+
| [[Media:20.109(F09) M2D5 handout.pdf| M2D5 lecture handout]],  [[Media:F09_M2D5-ANS.pdf | ANS lab notes]]
 
|--
 
|--
 
| 2
 
| 2
 
| 6
 
| 6
 
| Tues Nov 3
 
| Tues Nov 3
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[User:Tyler Dewitt| TD]]
+
| [http://openwetware.org/wiki/User:Tyler_Dewitt | TD]
 
| [[20.109(F09): Mod 2 Day 6 Readouts of DNA, Protein | Readouts: DNA, Protein]]
 
| [[20.109(F09): Mod 2 Day 6 Readouts of DNA, Protein | Readouts: DNA, Protein]]
−
|  
+
| Guest lecture from [http://openwetware.org/wiki/Endy_Lab Drew Endy]<br> [[Media:20.109(F09) M2D6 lab.pptx| NK lab handout]],  [[Media:F09_M2D6-ANS.pdf | ANS lab notes]]
 
|--
 
|--
 
| 2
 
| 2
 
| 7
 
| 7
 
| Thurs Nov 5   
 
| Thurs Nov 5   
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[User:Tyler Dewitt| TD]]
+
| [http://openwetware.org/wiki/User:Tyler_Dewitt | TD]
 
| [[20.109(F09): Journal Club II| Journal Club II]]
 
| [[20.109(F09): Journal Club II| Journal Club II]]
−
|
+
| [[Media:Research-article_OH-slides.pdf | ANS slides from 11/9 office hour]]
 
|--
 
|--
 
| colspan="7" |
 
| colspan="7" |
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| 1
 
| 1
 
| Thurs Nov 12   
 
| Thurs Nov 12   
−
| [[User:Abelcher| AB]]
+
| [http://openwetware.org/wiki/User:Abelcher | AB]
−
| [[User:Bridget Wall| BW]]
+
| [http://openwetware.org/wiki/User:Bridget_Wall | BW]
 
| [[20.109(F09): Mod 3 Day 1 Growth of phage materials| Growth of phage materials]]
 
| [[20.109(F09): Mod 3 Day 1 Growth of phage materials| Growth of phage materials]]
−
| Your [[20.109(F09): System engineering research article| Mod 2 research article]] is due before 11AM on the day you have lab
+
| Your [[20.109(F09): System engineering research article| Mod 2 research article]] is due before 11AM on the day you have lab<br>
 +
[[Media:20.109(F09) M3D1 labpix.pptx| NK lab handout]], [[Media:F09_M3D1-ANS.pdf | ANS lab notes]]
 
|--
 
|--
 
| 3
 
| 3
 
| 2
 
| 2
 
| Tues Nov 17
 
| Tues Nov 17
−
| [[User:Abelcher| AB]]
+
| [http://openwetware.org/wiki/User:Abelcher | AB]
−
| [[User:Bridget Wall| BW]]
+
| [http://openwetware.org/wiki/User:Bridget_Wall | BW]
 
| [[20.109(F09): Mod 3 Day 2 Phage nanowires| Phage nanowires]]
 
| [[20.109(F09): Mod 3 Day 2 Phage nanowires| Phage nanowires]]
−
|  
+
| [[Media:20.109(F09) M3D2 lab.pdf| NK lab handout]], [[Media:F09_M3D2-ANS.pdf | ANS lab notes]]
 
|--
 
|--
 
| 3
 
| 3
 
| 3
 
| 3
 
| Thurs Nov 19  
 
| Thurs Nov 19  
−
| [[User:Abelcher| AB]]
+
| [http://openwetware.org/wiki/User:Abelcher | AB]
−
| [[User:Bridget Wall| BW]]
+
| [http://openwetware.org/wiki/User:Bridget_Wall | BW]
 
| [[20.109(F09): Mod 3 Day 3 TEM| TEM]]
 
| [[20.109(F09): Mod 3 Day 3 TEM| TEM]]
−
|  
+
| [[Media:Trouble-shooting (2).ppt| troubleshooting ppt]]
 
|--
 
|--
 
| colspan="7" |
 
| colspan="7" |
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| 4
 
| 4
 
| Tues Dec 1  
 
| Tues Dec 1  
−
| [[User:Abelcher| AB]]
+
| [http://openwetware.org/wiki/User:Abelcher | AB]
−
| [[User:Bridget Wall| BW]]
+
| [http://openwetware.org/wiki/User:Bridget_Wall | BW]
 
| [[20.109(F09): Mod 3 Day 4 Battery assembly| Battery assembly]]
 
| [[20.109(F09): Mod 3 Day 4 Battery assembly| Battery assembly]]
−
|  
+
| At the start of today's lecture, Linda Sutliff will offer tips for giving talks with a partner<br>
 +
[[Media:Proposing Biological Engineering Projects.pdf| Linda's lecture slides]]<br>
 +
[[Media:20.109(F09) M3D4 labpic.pptx| NK lab notes]]
 
|--
 
|--
 
| 3
 
| 3
 
| 5
 
| 5
 
| Thurs Dec 3   
 
| Thurs Dec 3   
−
| [[User:Abelcher| AB]]
+
| [http://openwetware.org/wiki/User:Abelcher | AB]
−
| [[User:Bridget Wall| BW]]
+
| [http://openwetware.org/wiki/User:Bridget_Wall | BW]
 
| [[20.109(F09): Mod 3 Day 5 Battery testing| Battery testing]]
 
| [[20.109(F09): Mod 3 Day 5 Battery testing| Battery testing]]
−
|  
+
| Guest Lecture Dr. Mark Allen<br>[[Media:12 3 MAA.ppt| lecture ppt]]and [[Media:BatteryLab Calculations DataProcessing.pdf| calculation info]]<br>
 +
[[Media:20.109(F09) M3D5 labpics.pdf| NK lab notes]], [[Media:F09_M3D2-ANS.pdf | ANS lab notes]]<br>
 
|--
 
|--
 
| 3
 
| 3
 
| 6
 
| 6
 
| Tues Dec 8
 
| Tues Dec 8
−
| [[User:Abelcher| AB]]
+
| [http://openwetware.org/wiki/User:Abelcher | AB]
−
| [[User:Bridget Wall| BW]]
+
| [http://openwetware.org/wiki/User:Bridget_Wall | BW]
 
| [[20.109(F09): Mod 3 Day 6 Oral presentations| Research proposal presentations]]
 
| [[20.109(F09): Mod 3 Day 6 Oral presentations| Research proposal presentations]]
−
|   
+
|  We'll start this day in lab, 56-322, to finish off the BioMaterials module <br>[[Media:20 109 Battery Discharge Results (2).pptx| charge/discharge ppt]]and [[Media:Copy of 20 109 Consolidated Data(2).xlsx| data xls]] from John
 
|--
 
|--
 
|  
 
|  

Latest revision as of 19:42, 28 July 2015


20.109(F09): Laboratory Fundamentals of Biological Engineering

20.109(F09)FrontPage.jpg

Home        People        Schedule Fall 2009        Assignments        Lab Basics        OWW Basics       
DNA Engineering        System Engineering        Biomaterials Engineering              

MODULE DAY DATE LECTURER TA LAB note
Thur Sept 10 NK] Orientation Orientation lecture handout
1 1 Tue Sept 15 BE MSJ] DNA engineering using PCR Lecture Handout

NK lab notes, ANS lab notes

1 2 Thur Sept 17 BE MSJ] Clean and cut DNA Neal/Linda/Atissa visit lab

NK lab notes, ANS lab notes, Lecture Handout

1 3 Tue Sept 22 BE MSJ] Agarose gel electrophoresis NK lab notes, ANS lab notes, Lecture Handout
1 4 Thur Sept 24 BE MSJ] DNA ligation and bacterial transformation NK lab notes, ANS lab notes, [[Media:BE109 Fall09 Mod1 Day4 Lecture to post.pdf��� | Lecture Handout]]
1 5 Tue Sept 29 BE MSJ] Examine candidate clones Christine from EHS visits lab

NK lab notes, ANS lab notes, [[Media:BE109 Fall09 Mod1 Day5 Lecture fin To Post.pdf��� | Lecture Handout]]

1 6 Thur Oct 1 BE MSJ] Restriction map and tissue culture Neal/Linda visit lab for peer review exercise
NK lab notes, ANS lab notes, Lecture notes, Michelle's Stats for TR lab
1 7 Tue Oct 6 BE MSJ] Lipofection Mod 1 "progress report" due by 11AM on the day you have lab

NK lab notes, ANS lab notes, Lecture notes

1 8 Thur Oct 8 BE MSJ] FACS analysis Lecture notes
Columbus Day Break Monday Oct 12 No lab Tuesday and Wednesday
2 1 Thurs Oct 15 NK] TD] Testing an engineered biological system Mod 1 "memo" is due by 11AM on the day you have lab
M2D1 lecture handout
NK lab notes, ANS lab notes
2 2 Tues Oct 20 NK] TD] Measuring System Performance M2D2 lecture handout
NK lab notes, ANS lab notes
2 3 Thurs Oct 22 NK] TD] Tools for System Engineering M2D3 lecture handout
NK lab notes, ANS lab notes
2 4 Tues Oct 27 NK] TD] Journal Club I We'll be starting and ending this day in the lab so meet in 56-322
2 5 Thurs Oct 29 NK] TD] Assessing re-tuned system M2D5 lecture handout, ANS lab notes
2 6 Tues Nov 3 NK] TD] Readouts: DNA, Protein Guest lecture from Drew Endy
NK lab handout, ANS lab notes
2 7 Thurs Nov 5 NK] TD] Journal Club II ANS slides from 11/9 office hour
Veteran's Day Break Wed Nov 11 No lab Tuesday and Wednesday
3 1 Thurs Nov 12 AB] BW] Growth of phage materials Your Mod 2 research article is due before 11AM on the day you have lab

NK lab handout, ANS lab notes

3 2 Tues Nov 17 AB] BW] Phage nanowires NK lab handout, ANS lab notes
3 3 Thurs Nov 19 AB] BW] TEM troubleshooting ppt
Thanksgiving Break Nov 26, 27 No lab or lecture all week
3 4 Tues Dec 1 AB] BW] Battery assembly At the start of today's lecture, Linda Sutliff will offer tips for giving talks with a partner

Linda's lecture slides
NK lab notes

3 5 Thurs Dec 3 AB] BW] Battery testing Guest Lecture Dr. Mark Allen
lecture pptand calculation info

NK lab notes, ANS lab notes

3 6 Tues Dec 8 AB] BW] Research proposal presentations We'll start this day in lab, 56-322, to finish off the BioMaterials module
charge/discharge pptand data xls from John
Thurs Dec 10 end of term celebration... Lecture for class evaluations then lunch from noon-1:30 PM, no lab
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