Talk:20.109(F16):Module 1

From Course Wiki
Revision as of 15:45, 23 September 2016 by MAXINE JONAS (Talk | contribs)

Jump to: navigation, search
20.109(F16): Laboratory Fundamentals of Biological Engineering

Engelward PNAS 2006.png

Schedule Fall 2016        Announcements        Assignments        Homework        Communication
       1. Measuring Genomic Instability        2. Manipulating Metabolism        3. Engineering Biomaterials              

M1D2: cell loading parameters

All teams' choices are recorded here.
The images from the doubling time experiments, CometChip t = 0 (see below), are illustrative of how many cells were loaded per microwell under each condition.

M1D2: doubling time, pictures and fluorescence signal

The 'data' below refer to Excel spreadsheets

  • listing the fluorescence signal (a.u., with 1 cell corresponding to ~ 1600 a.u.) detected in each microwell in the field of view (rows 8 and above),
  • together with the average signal in representative macrowells of quadrants A1, A2, B1, and B2 (row 5; see loading conditions above),
  • and with the corresponding calculated doubling times (row 6).

One image per quadrant was recorded.

team data summary t=0 and t=2.5 images
T/R yellow data images
T/R green data images
T/R blue data images
T/R pink data images
T/R purple data images
W/F red data images
W/F green data images
W/F blue data images
W/F purple data images

M1D3: H2O2 and MMS dose response pictures and comet analysis

The 'data' below refer to Excel spreadsheets in which

  • rows A, B, C were triplicates in 'live' CometChips,
  • rows D, E, F in 'dead' CometChips,
  • and columns 1-6 correspond to the 6 drug doses the cells were treated with:
    • H2O2: 0, 10, 20, 40, 60, and 80 μM
    • MMS: 0, 0.25, 0.5, 1, 2, and 4 mM.

One image per macrowell was collected.

  • The 'comet number' tab indicates how many comets were analyzed in each image.
  • The other tabs represent various options to quantify DNA damage.
team data summary images
T/R yellow data images
T/R green data images
T/R blue data images
T/R pink data images
T/R purple data images
W/F red data images
W/F green data images
W/F blue data images
W/F purple data images