Difference between revisions of "20.109(F19): Fall 2019 schedule"
Noreen Lyell (Talk | contribs) (Created page with "<div style="padding: 10px; width: 820px; border: 5px solid #A4A4A4;"> {{Template:20.109(F19)}} Welcome to 20.109! It is our goal to make this class a useful and fun introduc...") |
Noreen Lyell (Talk | contribs) |
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− | | R/F Sept | + | | R/F Sept 5/6 |
− | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> | + | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> |
− | | [[20.109( | + | | [[20.109(F19):Lab tour | Orientation]]<br> |
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|-- | |-- | ||
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| 1 | | 1 | ||
| 1 | | 1 | ||
− | | T/W Sept | + | | T/W Sept 10/11 |
| [http://be.mit.edu/directory/bevin-p-engelward BE] | | [http://be.mit.edu/directory/bevin-p-engelward BE] | ||
− | | [[20.109( | + | | [[20.109(F19):Practice tissue culture and prepare microwell array (Day1)| Practice tissue culture and prepare microwell array]]<br> |
− | | <font color=#FF0000>'''Laboratory orientation quiz'''</font color><br>[[20.109( | + | | <font color=#FF0000>'''Laboratory orientation quiz'''</font color><br>[[20.109(F19):Homework#Due_M1D1|Homework due]] |
|-- | |-- | ||
| 1 | | 1 | ||
| 2 | | 2 | ||
− | | R/F Sept | + | | R/F Sept 12/13 |
| [http://be.mit.edu/directory/bevin-p-engelward BE] | | [http://be.mit.edu/directory/bevin-p-engelward BE] | ||
− | | [[20.109( | + | | [[20.109(F19):Design cell loading optimization experiment and discuss genomic instability experiment (Day2)| Design cell loading optimization experiment and research cell lines]]<br> |
− | | [[20.109( | + | | [[20.109(F19):Homework#Due_M1D2|Homework due]] |
|-- | |-- | ||
| 1 | | 1 | ||
| 3 | | 3 | ||
− | | T/W Sept | + | | T/W Sept 17/18 |
| [http://be.mit.edu/directory/bevin-p-engelward BE] | | [http://be.mit.edu/directory/bevin-p-engelward BE] | ||
− | | [[20.109( | + | | [[20.109(F19):Prepare and treat cells for genomic instability experiment (Day3)| Prepare and treat cells for genomic instability experiment]]<br> |
− | | [[20.109( | + | | [[20.109(F19):Homework#Due_M1D3|Homework due]] |
|-- | |-- | ||
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− | | R/F Sept | + | | R/F Sept 19/20 |
| [http://be.mit.edu/directory/bevin-p-engelward BE] | | [http://be.mit.edu/directory/bevin-p-engelward BE] | ||
| <font color = #33ff5e>'''Lecture, but no laboratory'''</font color><br><font color = 999999>Career fair student holiday</font color><br> | | <font color = #33ff5e>'''Lecture, but no laboratory'''</font color><br><font color = 999999>Career fair student holiday</font color><br> | ||
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| 1 | | 1 | ||
| 4 | | 4 | ||
− | | T/W Sept | + | | T/W Sept 24/25 |
| Comm Lab | | Comm Lab | ||
− | | [[20.109( | + | | [[20.109(F19):Complete genomic instability experiment and load cells for sub-nuclear foci assay (Day4)| Complete genomic instability experiment and load cells for sub-nuclear foci assay]]<br> |
− | | <font color=#FF0000>'''Laboratory quiz'''</font color><br>[[20.109( | + | | <font color=#FF0000>'''Laboratory quiz'''</font color><br>[[20.109(F19):Homework#Due_M1D4|Homework due]] |
|-- | |-- | ||
| 1 | | 1 | ||
| 5 | | 5 | ||
− | | R/F Sept | + | | R/F Sept 26/27 |
| [http://be.mit.edu/directory/bevin-p-engelward BE] | | [http://be.mit.edu/directory/bevin-p-engelward BE] | ||
− | | [[20.109( | + | | [[20.109(F19):Analyze genomic instability experiment data and treat cells for sub-nuclear foci assay (Day5)| Analyze instability experiment data and treat cells for sub-nuclear foci assay]]<br> |
− | | [[20.109( | + | | [[20.109(F19):Homework#Due_M1D5|Homework due]] |
|-- | |-- | ||
| 1 | | 1 | ||
| 6 | | 6 | ||
− | | T/W Oct | + | | T/W Oct 1/2 |
| [http://be.mit.edu/directory/bevin-p-engelward BE] | | [http://be.mit.edu/directory/bevin-p-engelward BE] | ||
− | | [[20.109( | + | | [[20.109(F19):Complete sub-nuclear foci assay (Day6)| Complete sub-nuclear foci assay]]<br> |
− | | [[20.109( | + | | [[20.109(F19):Homework#Due_M1D6|Homework due]] |
|-- | |-- | ||
| 1 | | 1 | ||
| 7 | | 7 | ||
− | | R/F Oct | + | | R/F Oct 3/4 |
| [http://be.mit.edu/directory/bevin-p-engelward BE] | | [http://be.mit.edu/directory/bevin-p-engelward BE] | ||
− | | [[20.109( | + | | [[20.109(F19):Practice statistical analysis methods and complete data analysis (Day7)| Practice statistical analysis methods and complete data analysis]]<br> |
− | | <font color=#FF0000>'''Laboratory quiz'''</font color><br>[[20.109( | + | | <font color=#FF0000>'''Laboratory quiz'''</font color><br>[[20.109(F19):Homework#Due_M1D7|Homework due]] |
+ | |-- | ||
+ | | 2 | ||
+ | | 1 | ||
+ | | R/F Oct 8/9 | ||
+ | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> | ||
+ | | [[20.109(F19):Complete in silico cloning (Day1)| Complete in silico cloning]]<br> | ||
+ | | [[20.109(F19):Homework#Due_M2D1| Homework due]]<br>[[20.109(F19): Mini-presentation| Mini-presentation due]] Sat, X at 10 pm | ||
+ | |-- | ||
+ | | 2 | ||
+ | | 2 | ||
+ | | T/W Oct 10/11 | ||
+ | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> | ||
+ | | [[20.109(F19):Design gRNA for CRISPRi (Day2)| Design gRNA for CRISPRi]]<br> | ||
+ | | [[20.109(F19):Homework#Due_M2D2|Homework due]] | ||
|-- | |-- | ||
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− | | <font color = 999999>T/W Oct | + | | <font color = 999999>T/W Oct 15/16</font color> |
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| <font color = 999999>Columbus day holiday</font color> | | <font color = 999999>Columbus day holiday</font color> | ||
− | | [[20.109( | + | | [[20.109(F19): Data Summary| Data Summary draft due]] Wed, X at 10 pm<br>[ Blog post due] Thurs, X at 10 pm |
|-- | |-- | ||
| colspan="7" | | | colspan="7" | | ||
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|-- | |-- | ||
| 2 | | 2 | ||
| 3 | | 3 | ||
− | | R/F Oct | + | | R/F Oct 17/18 |
− | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> | + | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> |
− | | [[20.109( | + | | [[20.109(F19):Generate gRNA plasmid (Day3)| Generate gRNA plasmid]]<br> |
− | | [[20.109( | + | | [[20.109(F19):Homework#Due_M2D3|Homework due]]<br>[[20.109(F19): Data Summary| Data Summary revision due]] Sat, X at 10 pm |
|-- | |-- | ||
| 2 | | 2 | ||
| 4 | | 4 | ||
− | | T/W Oct | + | | T/W Oct 22/23 |
− | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> | + | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> |
− | | [[20.109( | + | | [[20.109(F19):Journal club presentation (Day4 and 6)| Journal club I]] |
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|-- | |-- | ||
| 2 | | 2 | ||
| 5 | | 5 | ||
− | | R/F Oct | + | | R/F Oct 24/25 |
− | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> | + | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> |
− | | [[20.109( | + | | [[20.109(F19):Confirm gRNA sequence (Day5)| Confirm gRNA sequence]]<br> |
− | | <font color=#FF0000>'''Laboratory quiz'''</font color><br>[[20.109( | + | | <font color=#FF0000>'''Laboratory quiz'''</font color><br>[[20.109(F19):Homework#Due_M2D5|Homework due]] |
|-- | |-- | ||
| 2 | | 2 | ||
| 6 | | 6 | ||
− | | T/W Oct | + | | T/W Oct 29/30 |
− | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> | + | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> |
− | | [[20.109( | + | | [[20.109(F19):Journal club presentation (Day4 and 6) | Journal club II]] |
| | | | ||
|-- | |-- | ||
| 2 | | 2 | ||
| 7 | | 7 | ||
− | | R/F Nov | + | | R/F Oct/Nov 31/1 |
− | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> | + | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> |
− | | [[20.109( | + | | [[20.109(F19):Induce CRISPRi system (Day7)| Induce CRISPRi system]]<br> |
− | | [[20.109( | + | | [[20.109(F19):Homework#Due_M2D7|Homework due]]<br>[ Blog post due] Fri, X at 10 pm |
|-- | |-- | ||
| 2 | | 2 | ||
| 8 | | 8 | ||
− | | T/W Nov | + | | T/W Nov 5/6 |
− | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> | + | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> |
− | | [[20.109( | + | | [[20.109(F19):Measure_fermentation_products_(Day8) | Measure fermentation products]]<br> |
− | | <font color=#FF0000>'''Laboratory quiz'''</font color><br>[[20.109( | + | | <font color=#FF0000>'''Laboratory quiz'''</font color><br>[[20.109(F19):Homework#Due_M2D8|Homework due]] |
|-- | |-- | ||
| colspan="7" | | | colspan="7" | | ||
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| 1 | | 1 | ||
| R/F Nov 8/9 | | R/F Nov 8/9 | ||
− | | | + | | |
− | | | + | | |
− | | [[20.109( | + | | [[20.109(F19):Homework#Due_M3D1|Homework due]] <br> |
|-- | |-- | ||
| | | | ||
| | | | ||
− | | <font color = 999999>T/W Nov | + | | <font color = 999999>T/W Nov 12/13</font color> |
| | | | ||
| <font color = 999999>Veterans' day holiday</font color> | | <font color = 999999>Veterans' day holiday</font color> | ||
− | | [[20.109( | + | | [[20.109(F19): Research article| Research article due]] Mon, X at 10 pm <br>[ Blog post due] Tue, X at 10 pm |
|-- | |-- | ||
| 3 | | 3 | ||
| 2 | | 2 | ||
− | | R/F Nov 15 | + | | R/F Nov 14/15 |
− | | | + | | |
− | | | + | | |
− | | [[20.109( | + | | [[20.109(F19):Homework#Due_M3D2|Homework due]]<br> |
|-- | |-- | ||
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| | | | ||
− | | T/W Nov 20 | + | | T/W Nov 19/20 |
− | | | + | | |
| <font color = #33ff5e>'''Lecture, but no laboratory'''</font color> | | <font color = #33ff5e>'''Lecture, but no laboratory'''</font color> | ||
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− | | <font color = 999999>R/F Nov | + | | <font color = 999999>R/F Nov 21/22</font color> |
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| <font color = 999999>Thanksgiving holiday</font color> | | <font color = 999999>Thanksgiving holiday</font color> | ||
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| 3 | | 3 | ||
| 3 | | 3 | ||
− | | T/W Nov 27 | + | | T/W Nov 26/27 |
− | | | + | | |
− | | | + | | |
− | | <font color=#FF0000>'''Laboratory quiz'''</font color><br>[[20.109( | + | | <font color=#FF0000>'''Laboratory quiz'''</font color><br>[[20.109(F19):Homework#Due_M3D3| Homework due]] |
|-- | |-- | ||
| 3 | | 3 | ||
| 4 | | 4 | ||
− | | R/F Nov/ | + | | R/F Nov 28/29 |
− | | | + | | |
− | | | + | | |
− | | [[20.109( | + | | [[20.109(F19):Homework#Due_M3D4|Homework due]] |
|-- | |-- | ||
| 3 | | 3 | ||
| 5 | | 5 | ||
− | | T/W Dec 4 | + | | T/W Dec 3/4 |
− | | | + | | |
− | | | + | | |
− | | <font color=#FF0000>'''Laboratory quiz'''</font color><br>[[20.109( | + | | <font color=#FF0000>'''Laboratory quiz'''</font color><br>[[20.109(F19):Homework#Due_M3D5|Homework due]] |
|-- | |-- | ||
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| | | | ||
− | | R/F Dec | + | | R/F Dec 5/6 |
| | | | ||
− | | [[20.109( | + | | [[20.109(F19):Research proposal presentation| Research proposal presentations]] |
− | | [ | + | | [ Blog post due] Fri, X at 10 pm |
|-- | |-- | ||
| colspan="7" | | | colspan="7" | | ||
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− | | T Dec | + | | T Dec 10 |
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| <font color = #33ff5e>'''Feedback and celebratory lunch'''</font color> | | <font color = #33ff5e>'''Feedback and celebratory lunch'''</font color> | ||
− | | [[20.109( | + | | [[20.109(F19): Mini-report | Mini-report due]] Mon, Dec 9 at 10 pm <br> |
|} | |} | ||
</div> | </div> |
Revision as of 19:04, 13 June 2019
Welcome to 20.109! It is our goal to make this class a useful and fun introduction to the experiments and techniques used in biological engineering. Though there is not time enough to show you everything needed to do research, after this class you will feel confident and familiar with some fundamental experimental approaches and laboratory protocols. You will develop good habits at the bench, which will increase the likelihood of success in your work and ensure the health and safety of you and your labmates. By the end of the semester, you will also be well-versed in good scientific practices - through your experience with scientific writing, notebook keeping, and orally presenting data and novel ideas. All of us involved in teaching 20.109 hope you will find it a satisfying challenge and an exciting experience that has lasting value.
SCHEDULE DETAILS:
Lecture times: T/R 11 - 12 pm (16-220)
Laboratory section times: T/R 1 - 5 pm or W/F 1 - 5 pm (56-322)
MODULE | DAY | DATE | LECTURER | LABORATORY EXPERIMENTS | ASSIGNMENTS | |
R/F Sept 5/6 | NLL |
Orientation |
||||
1 | 1 | T/W Sept 10/11 | BE | Practice tissue culture and prepare microwell array |
Laboratory orientation quiz Homework due | |
1 | 2 | R/F Sept 12/13 | BE | Design cell loading optimization experiment and research cell lines |
Homework due | |
1 | 3 | T/W Sept 17/18 | BE | Prepare and treat cells for genomic instability experiment |
Homework due | |
R/F Sept 19/20 | BE | Lecture, but no laboratory Career fair student holiday |
||||
1 | 4 | T/W Sept 24/25 | Comm Lab | Complete genomic instability experiment and load cells for sub-nuclear foci assay |
Laboratory quiz Homework due | |
1 | 5 | R/F Sept 26/27 | BE | Analyze instability experiment data and treat cells for sub-nuclear foci assay |
Homework due | |
1 | 6 | T/W Oct 1/2 | BE | Complete sub-nuclear foci assay |
Homework due | |
1 | 7 | R/F Oct 3/4 | BE | Practice statistical analysis methods and complete data analysis |
Laboratory quiz Homework due | |
2 | 1 | R/F Oct 8/9 | NLL |
Complete in silico cloning |
Homework due Mini-presentation due Sat, X at 10 pm | |
2 | 2 | T/W Oct 10/11 | NLL |
Design gRNA for CRISPRi |
Homework due | |
T/W Oct 15/16 | Columbus day holiday | Data Summary draft due Wed, X at 10 pm [ Blog post due] Thurs, X at 10 pm | ||||
2 | 3 | R/F Oct 17/18 | NLL |
Generate gRNA plasmid |
Homework due Data Summary revision due Sat, X at 10 pm | |
2 | 4 | T/W Oct 22/23 | NLL |
Journal club I | ||
2 | 5 | R/F Oct 24/25 | NLL |
Confirm gRNA sequence |
Laboratory quiz Homework due | |
2 | 6 | T/W Oct 29/30 | NLL |
Journal club II | ||
2 | 7 | R/F Oct/Nov 31/1 | NLL |
Induce CRISPRi system |
Homework due [ Blog post due] Fri, X at 10 pm | |
2 | 8 | T/W Nov 5/6 | NLL |
Measure fermentation products |
Laboratory quiz Homework due | |
3 | 1 | R/F Nov 8/9 | Homework due | |||
T/W Nov 12/13 | Veterans' day holiday | Research article due Mon, X at 10 pm [ Blog post due] Tue, X at 10 pm | ||||
3 | 2 | R/F Nov 14/15 | Homework due | |||
T/W Nov 19/20 | Lecture, but no laboratory | |||||
R/F Nov 21/22 | Thanksgiving holiday | |||||
3 | 3 | T/W Nov 26/27 | Laboratory quiz Homework due | |||
3 | 4 | R/F Nov 28/29 | Homework due | |||
3 | 5 | T/W Dec 3/4 | Laboratory quiz Homework due | |||
R/F Dec 5/6 | Research proposal presentations | [ Blog post due] Fri, X at 10 pm | ||||
T Dec 10 | Feedback and celebratory lunch | Mini-report due Mon, Dec 9 at 10 pm |