Difference between revisions of "Talk:20.109(F17):Module 2"
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− | |[[Media:TR | + | |[[Media:Fa17 TR Red M2 seq.zip| files]] |
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− | |[[Media:TR | + | |[[Media:Fa17 TR Orange M2 seq.zip| files]] |
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− | |[[Media:TR Yellow.zip| files]] | + | |[[Media:Fa17 TR Yellow M2 seq.zip| files]] |
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− | |[[Media:TR Green.zip| files]] | + | |[[Media:Fa17 TR Green M2 seq.zip| files]] |
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− | |[[Media:TR Blue.zip| files]] | + | |[[Media:Fa17 TR Blue M2 seq.zip| files]] |
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− | |[[Media:TR Pink.zip| files]] | + | |[[Media:Fa17 TR Pink M2 seq.zip| files]] |
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− | |[[Media:TR Purple.zip| files]] | + | |[[Media:Fa17 TR Purple M2 seq.zip| files]] |
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− | |[[Media:TR | + | |[[Media:Fa17 TR White M2 seq.zip| files]] |
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Revision as of 14:46, 2 November 2017
Contents
Fermentation product and gene targeted:
T/R
Team | Ethanol (E) or Acetate (A) | Gene targeted by CRISPRi gRNA | gRNA sequence (without tag at 3' end) | Locus targeted (eg. beginning of gene, putative promoter, -35 region) | Target template or nontemplate strand |
red | Acetate | adhE | TTAACGCACTCGTAGAGCGTGTAAA | ||
orange | Ethanol | pta-ack | CTATGGCTCCCTGACGTTTT | ||
yellow | Ethanol | frdA | GCTGTGGGATAAAAACAATCTGGAG | ||
green | E | LdhA | ttgtgctataaacggcgagtttcat | ||
blue | E | pta | ttcacgacaacgttcaataatcat | ||
pink | Acetate | adhE | TTACTAAAAAAGTTTAACATTATCA | ||
purple | Acetate | adhE | TTTACTAAAAAAGTTTAACATTATC | ||
white | Acetate | adhE | CTGATAATGTTAAACTTTTT |
W/F
Team | Ethanol (E) or Acetate (A) | Gene targeted by CRISPRi gRNA | gRNA sequence (without tag at 3' end) | Locus targeted (eg. beginning of gene, putative promoter, -35 region) | Target template or nontemplate strand |
red | Ethanol | ack (indirectly, pta) | GTTTTTTTAGCCACGTATCAATTAT | ||
orange | Ethanol | ldhA | ATTCAACATCACTGGAGAAAGTCTT | ||
blue | Ethanol | ackA | TTTTTAGCCACGTATCAATTAT |
M2D5/M2D7: sequencing data
T/R
Team | pgRNA sequencing |
red | files |
orange | files |
yellow | files |
green | files |
blue | files |
pink | files |
purple | files |
white | files |
W/F
Team | pgRNA sequencing |
red | files |
orange | files |
blue | files |