Difference between revisions of "20.309 Main Page"
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* [https://stellar.mit.edu/S/course/20/fa13/20.309/materials.html Lectures 1 through 9 of the 20.309 class] | * [https://stellar.mit.edu/S/course/20/fa13/20.309/materials.html Lectures 1 through 9 of the 20.309 class] | ||
* From [http://www.microscopyu.com Nikon MicroscopyU] | * From [http://www.microscopyu.com Nikon MicroscopyU] | ||
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** [http://www.microscopyu.com/articles/formulas/formulasri.html Snell's law] | ** [http://www.microscopyu.com/articles/formulas/formulasri.html Snell's law] | ||
** [http://www.microscopyu.com/articles/formulas/formulasresolution.html Resolution] | ** [http://www.microscopyu.com/articles/formulas/formulasresolution.html Resolution] | ||
Revision as of 00:32, 27 August 2019
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20.309 course information
- 20.309 course information
- lab safety
- Reserve a lab station here: Bioinstrumentation Lab reservation system
20.309 master schedule
Module 1: Optics & Microscopy
| Important dates | Assignment due | Assignment page links | Useful resources |
| 2/17/19 | Assignment 1 | ||
| 2/24/19 | Assignment 2 | Assignment 2 Overview | |
| 2/28/19 | Quiz 1 (in lecture) | ||
| 3/3/19 | Assignment 3 | Assignment 3 Overview | |
| 3/10/19 | Assignment 4 | ||
| 3/17/19 | Assignment 5 | Assignment 5 Overview | |
| 10/17/19 | Exam 1 (at 7:30pm) in 32-144 |
Module 2: electronics, signals and systems
| Important dates | Assignment due | Assignment page links | Useful resources |
| 4/7/19 or 4/14/19 | Assignment 6 | Assignment 6 overview | |
| 4/14/19 | Assignment 7 | Electronics bootcamp II: feedback systems | |
| 4/19/19 | Quiz 2 (in lecture) | ||
| 4/21/19 | Assignment 8 | Assignment 8 Overview: flow channel & two-color microscope | *The* yeast paper: Mettelal et al., Science (2008) |
| 4/28/19 | Assignment 9 | Assignment 9 Overview: Analyzing yeast images | |
| 5/5/19 | Assignment 10 | Assignment 10, Part 1: Measuring the osmotic shock response of yeast | |
| 5/9/19 | Exam 2 (at 7:30pm) in 32-123 | ||
| 5/16/19 | Assignment 11 | Assignment 11: Tell us about your lab visit |
Optics and microscopy resources
Background reading
- Geometrical optics and ray tracing
- Physical optics and resolution
- Optical aberrations
- Aperture and field stops
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Code examples and simulations
- Converting Gaussian fit to Rayleigh resolution
- MATLAB: Estimating resolution from a PSF slide image
- Matlab: Scalebars
- Calculating MSD and Diffusion Coefficients
Electronics resources
Background reading
- Electronics primer
- Khan Academy Material, esp. "Ideal Circuit Elements" and "Voltage Divider"
- Real electronics
- Impedance analysis
- Transfer functions and Bode plots
- Complex number review
- Input and output impedance
Limits of detection mini-lab
- Lab Manual: Limits of Detection
- Lab Manual: Atomic Force Microscopy (AFM)
- Limits of Detection: Data Sessions
