Difference between revisions of "20.109(F21):Fall 2021 schedule"

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|--
 
|--
 
| M2D1
 
| M2D1
| R/F Mar 18/19
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|  
| [http://be.mit.edu/directory/angela-koehler AK] <br> [[Media:20109 M2L1 2021.pdf|Slides]]
+
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>
| [[20.109(S21):M2D1 |Perform protein purification protocol]] <br> [[Media:Sp21 M2D1 bcm marked.pdf | T/R prelab]] <br> [https://www.dropbox.com/sh/khcxnq9fyo68gvt/AACYdN42VVwvZ4WLUyp743_Na?dl=0 W/F prelab]
+
| [[20.109(F21):M2D1 |Placeholder]] <br>  
| [[20.109(S21):Homework#Due_M2D1|Homework due]]
+
| [[20.109(F21):Homework#Due_M2D1|Homework due]]
 
|--
 
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| <font color = #0d368e>'''Student holiday'''</font color>
 
| <font color = #0d368e>'''Student holiday'''</font color>
| [[20.109(S21):Data Summary| <font color = #b3251c>'''Data Summary draft due'''</font color>]] Wed, Mar 24 at 10 pm <br>
+
| [[20.109(S21):Data Summary| <font color =   #a93226 >'''Data Summary draft due'''</font color>]] Day, Mth XX at 10 pm <br>
 
|--
 
|--
 
| M2D2
 
| M2D2
| R/F Mar 25/26
+
|  
| [http://be.mit.edu/directory/angela-koehler AK] <br> [[Media:20109 M2L2 2021.pdf|Slides]]
+
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>
| [[20.109(S21):M2D2 |Assess purity and concentration of purified protein ]] <br> [[Media:Sp21 M2D2 bcm marked.pdf | T/R Prelab]] <br> [https://www.dropbox.com/sh/khcxnq9fyo68gvt/AACYdN42VVwvZ4WLUyp743_Na?dl=0 W/F prelab]
+
| [[20.109(F21):M2D2 |Placeholder]] <br>  
| [[20.109(S21):Homework#Due_M2D2| Homework due]] <br> [[20.109(S21):Mini-presentation| <font color = #b3251c>'''Mini-presentation due'''</font color>]] Sun, Mar 28 at 10 pm <br>[http://app.slack.com/client/T01KU1VLZQB/C01KQNPD3UM Blog post due] Mon, Mar 29 at 10 pm
+
| [[20.109(F21):Homework#Due_M2D2| Homework due]] <br> [[20.109(F21):Mini-presentation| <font color =   #a93226 >'''Mini-presentation due'''</font color>]] Day, Mth XX at 10 pm <br>[ Blog post due] Day, Mth XX at 10 pm
 
|--
 
|--
 
| M2D3
 
| M2D3
| T/W Mar 30/31
+
|  
| [http://be.mit.edu/directory/angela-koehler AK] <br> [[Media:20109 M2L3 2021.pdf|Slides]]
+
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>
 
| [[20.109(S21):M2D3 |Prepare and scan small molecule microarray (SMM) slides]] <br> [[Media:Sp21 M2D3 bcm marked.pdf | T/R Prelab]] <br> [https://www.dropbox.com/sh/khcxnq9fyo68gvt/AACYdN42VVwvZ4WLUyp743_Na?dl=0 W/F prelab]
 
| [[20.109(S21):M2D3 |Prepare and scan small molecule microarray (SMM) slides]] <br> [[Media:Sp21 M2D3 bcm marked.pdf | T/R Prelab]] <br> [https://www.dropbox.com/sh/khcxnq9fyo68gvt/AACYdN42VVwvZ4WLUyp743_Na?dl=0 W/F prelab]
 
| [[20.109(S21):Homework#Due_M2D3|Homework due]]
 
| [[20.109(S21):Homework#Due_M2D3|Homework due]]
 
|--
 
|--
 
| M2D4
 
| M2D4
| R/F Apr 1/2
+
|  
| [http://be.mit.edu/directory/angela-koehler AK] <br> [[Media:20109 M2L4 2021.pdf|Slides]]
+
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>
 
| [[20.109(S21):M2D4 |Analyze SMM data to identify putative small molecule binders]] <br> [[Media:Sp21 M2D4 bcm marked.pdf | T/R Prelab]] <br> [https://www.dropbox.com/sh/khcxnq9fyo68gvt/AACYdN42VVwvZ4WLUyp743_Na?dl=0 W/F prelab]
 
| [[20.109(S21):M2D4 |Analyze SMM data to identify putative small molecule binders]] <br> [[Media:Sp21 M2D4 bcm marked.pdf | T/R Prelab]] <br> [https://www.dropbox.com/sh/khcxnq9fyo68gvt/AACYdN42VVwvZ4WLUyp743_Na?dl=0 W/F prelab]
| <font color= #d1b217 >'''Laboratory quiz'''</font color> <br> [[20.109(S21):Homework#Due_M2D4|Homework due]]<br>[[20.109(S21):Data Summary| <font color = #b3251c>'''Data Summary revision due'''</font color>]] Sun, Apr 4 at 10 pm <br>
+
| <font color= #d98880 >'''Laboratory quiz'''</font color> <br> [[20.109(S21):Homework#Due_M2D4|Homework due]]<br>[[20.109(S21):Data Summary| <font color =   #a93226 >'''Data Summary revision due'''</font color>]] Sun, Apr 4 at 10 pm <br>
 
|--
 
|--
 
|  
 
|  
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|--
 
|--
 
| M2D5
 
| M2D5
| T/W Apr 13/14
+
|  
| [http://be.mit.edu/directory/angela-koehler AK] <br> [[Media:20109 M2L5 2021.pdf|Slides]]<br> AI articles linked: [[Media:S41587-020-0418-2.pdf|here]] and [[Media:S41587-020-0417-3.pdf|here]]
+
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>
 
| [[20.109(S21):M2D5 |Learn best practices for mammalian cell culture ]] <br> [[Media:Sp21 M2D5 bcm marked.pdf | T/R Prelab]]<br> [[Media:Sp21_M2D5_lmm.pdf| W/F Prelab]]
 
| [[20.109(S21):M2D5 |Learn best practices for mammalian cell culture ]] <br> [[Media:Sp21 M2D5 bcm marked.pdf | T/R Prelab]]<br> [[Media:Sp21_M2D5_lmm.pdf| W/F Prelab]]
 
| [[20.109(S21):Homework#Due_M2D5|Homework due]]<br>
 
| [[20.109(S21):Homework#Due_M2D5|Homework due]]<br>
 
|--
 
|--
 
| M2D6
 
| M2D6
| R/F Apr 15/16
+
|  
| [http://be.mit.edu/directory/angela-koehler AK] <br> [[Media:20109 M2L6 2021.pdf|Slides]]
+
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>
 
| [[20.109(S21):M2D6 |Utilize cellular thermal shift assay (CETSA) to test putative small molecule binders]] <br> [[Media:Sp21 M2D6 JCH update.pdf| T/R Prelab]]<br> [[Media:Sp21 M2D6 lmm.pdf| W/F Prelab]]
 
| [[20.109(S21):M2D6 |Utilize cellular thermal shift assay (CETSA) to test putative small molecule binders]] <br> [[Media:Sp21 M2D6 JCH update.pdf| T/R Prelab]]<br> [[Media:Sp21 M2D6 lmm.pdf| W/F Prelab]]
 
| [[20.109(S21):Homework#Due_M2D6|Homework due]]<br>
 
| [[20.109(S21):Homework#Due_M2D6|Homework due]]<br>
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|--
 
|--
 
| M2D7
 
| M2D7
| R/F Apr 22/23
+
|  
| [http://be.mit.edu/directory/angela-koehler AK] <br> [[Media:20109 M2L7 2021.pdf|Slides]]
+
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>
| [[20.109(S21):M2D7 |Complete CETSA experiment and analyze data]] <br> [[Media:Sp21 M2D7 bcm marked.pdf| T/R Prelab]]<br> [[Media:Sp21_M2D7_lmm.pdf | W/F Prelab]]
+
| [[20.109(F21):M2D7 |Placeholder]] <br>  
| <font color= #d1b217 >'''Laboratory quiz'''</font color> <br> [[20.109(S21):Homework#Due_M2D7|Homework due]]<br>
+
| <font color= #d98880 >'''Laboratory quiz'''</font color> <br> [[20.109(S21):Homework#Due_M2D7|Homework due]]<br>
 
|--
 
|--
 
| colspan="6" |
 
| colspan="6" |
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| [http://be.mit.edu/directory/alan-p-jasanoff AJ] <br> [[Media:2021 lect4 fluorescence.pptx|Slides]]
 
| [http://be.mit.edu/directory/alan-p-jasanoff AJ] <br> [[Media:2021 lect4 fluorescence.pptx|Slides]]
 
| [[20.109(S21):M3D4 |Design new IPC variant ]] <br> [[Media:Sp21 M3D4 bcm.pdf| T/R prelab]]<br> [[Media:Sp21_M3D4_lmm.pdf | W/F prelab]]
 
| [[20.109(S21):M3D4 |Design new IPC variant ]] <br> [[Media:Sp21 M3D4 bcm.pdf| T/R prelab]]<br> [[Media:Sp21_M3D4_lmm.pdf | W/F prelab]]
| <font color= #d1b217 >'''Laboratory quiz''' <br>[[20.109(S21):Homework#Due_M3D5|Homework due]]
+
| <font color= #d98880 >'''Laboratory quiz''' <br>[[20.109(S21):Homework#Due_M3D5|Homework due]]
 
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|--
 
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Revision as of 21:28, 9 July 2021

20.109(F21): Laboratory Fundamentals of Biological Engineering
Drawing provided by Marissa A., 20.109 student in Sp21 term.  Schematic generated using BioRender.

Fall 2021 schedule        FYI        Assignments        Homework        Class data        Communication        Accessibility

       Module 1: Genomic instability                          Module 2: Drug discovery       


Welcome to 20.109! It is our goal to make this class a useful and fun introduction to the experiments and techniques used in biological engineering. Though there is not enough time to show you everything needed to do research, after this class you will feel confident and familiar with some fundamental experimental approaches and laboratory protocols. You will develop good habits at the bench, which will increase the likelihood of success in your work and ensure the health and safety of you and your labmates. By the end of the semester, you will also be well-versed in good scientific practices - through your experience with scientific writing, notebook keeping, and orally presenting data and novel ideas. All of us involved in teaching 20.109 hope you will find it a satisfying challenge and an exciting experience that has lasting value.

SCHEDULE DETAILS:
Lecture times:

  • Tuesday (T) and Thursday (R) 11 - 12 pm

Laboratory section times:

  • Tuesday (T) and Thursday (R) 1 - 5 pm
  • Wednesday (W) and Friday (F) 1 - 5 pm
MODULE DATE LECTURER LABORATORY EXPERIMENTS ASSIGNMENTS
NLL
[[ |Slides]]
Orientation and laboratory tour
M1D1 BE
Placeholder
Orientation quiz
Homework due
M1D2 BE
Placeholder
Homework due
M1D3 BE
Placeholder
Homework due
M1D4 BE
Placeholder
Laboratory quiz
Homework due
M1D5 BE
Placeholder
Homework due
T/W Mar 9/10 Student holiday
M1D6 BE
Placeholder
Homework due
M1D7 BE
Placeholder
Laboratory quiz
Homework due
M2D1 NLL
Placeholder
Homework due
T/W Mar 23/24 Student holiday Data Summary draft due Day, Mth XX at 10 pm
M2D2 NLL
Placeholder
Homework due
Mini-presentation due Day, Mth XX at 10 pm
[ Blog post due] Day, Mth XX at 10 pm
M2D3 NLL
Prepare and scan small molecule microarray (SMM) slides
T/R Prelab
W/F prelab
Homework due
M2D4 NLL
Analyze SMM data to identify putative small molecule binders
T/R Prelab
W/F prelab
Laboratory quiz
Homework due
Data Summary revision due Sun, Apr 4 at 10 pm
T/W Apr 6/7 Journal club presentations
R/F Apr 8/9 Journal club presentations Blog post due Sat, Apr 10 at 10 pm
M2D5 NLL
Learn best practices for mammalian cell culture
T/R Prelab
W/F Prelab
Homework due
M2D6 NLL
Utilize cellular thermal shift assay (CETSA) to test putative small molecule binders
T/R Prelab
W/F Prelab
Homework due
T/W Apr 20/21 Student holiday
M2D7 NLL
Placeholder
Laboratory quiz
Homework due
M3D1 T/W Apr 27/28 AJ
Slides
Review IPC literature and examine structural characteristics
T/R Prelab
W/F Prelab
Homework due
M3D2 R/F Apr 29/30 AJ
Slides
Identify IPC mutations
T/R prelab
W/F prelab
Homework due
Research article due Sun, May 2 at 10 pm
Blog post due Mon, May 3 at 10 pm
M3D3 T/W May 4/5 AJ
Slides
Evaluate effect of mutations on IPC variants
T/R prelab
W/F prelab
Homework due
R/F May 6/7 Research proposal pitches
Develop Research proposal ideas and presentations
Prompts for discussion/homework
M3D4 T/W May 11/12 AJ
Slides
Design new IPC variant
T/R prelab
W/F prelab
Laboratory quiz
Homework due
R/F May 13/14 AJ
Slides
Mini-report due by 10 pm
T/W May 18/19 Research proposal presentations Blog post due Thu, May 20 at 10 pm
R May 20 Feedback session

</div>