Difference between revisions of "20.109(F24):Fall 2024 schedule"

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Line 21: Line 21:
 
|--
 
|--
 
|  
 
|  
| R/F Sep 7/8  
+
| R/F Sep 5/6  
 
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>  
 
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>  
 
| [[20.109(F24):Laboratory tour | Orientation and laboratory tour]]<br>  
 
| [[20.109(F24):Laboratory tour | Orientation and laboratory tour]]<br>  
Line 27: Line 27:
 
|--
 
|--
 
| M1D1
 
| M1D1
| T/W Sep 12/13
+
| T/W Sep 10/11
 
| [http://be.mit.edu/directory/bevin-p-engelward BPE] <br>  
 
| [http://be.mit.edu/directory/bevin-p-engelward BPE] <br>  
 
| [[20.109(F24):M1D1 | Learn best practices for mammalian cell culture]]<br>  
 
| [[20.109(F24):M1D1 | Learn best practices for mammalian cell culture]]<br>  
Line 33: Line 33:
 
|--
 
|--
 
| M1D2
 
| M1D2
| R/F Sep 14/15    
+
| R/F Sep 12/13    
 
| [http://be.mit.edu/directory/bevin-p-engelward BPE] <br>  
 
| [http://be.mit.edu/directory/bevin-p-engelward BPE] <br>  
 
| [[20.109(F24):M1D2 | Prepare and treat cells for &gamma;H2AX experiment]]<br>  
 
| [[20.109(F24):M1D2 | Prepare and treat cells for &gamma;H2AX experiment]]<br>  
Line 39: Line 39:
 
|--
 
|--
 
| M1D3
 
| M1D3
| T/W Sep 19/20
+
| T/W Sep 17/18
 
| [http://be.mit.edu/directory/bevin-p-engelward BPE] <br>  
 
| [http://be.mit.edu/directory/bevin-p-engelward BPE] <br>  
 
| [[20.109(F24):M1D3 | Use immunoflourescence staining to assess &gamma;H2AX experiment]]<br>  
 
| [[20.109(F24):M1D3 | Use immunoflourescence staining to assess &gamma;H2AX experiment]]<br>  
Line 45: Line 45:
 
|--
 
|--
 
|  
 
|  
| R/F Sep 21/22
+
| R/F Sep 19/20
 
| BE Comm Lab
 
| BE Comm Lab
 
| <font color = #848585>'''Career Day holiday'''</font color>
 
| <font color = #848585>'''Career Day holiday'''</font color>
Line 51: Line 51:
 
|--
 
|--
 
| M1D4
 
| M1D4
| T/W Sep 26/27
+
| T/W Sep 24/25
 
| [http://be.mit.edu/directory/bevin-p-engelward BPE] <br>  
 
| [http://be.mit.edu/directory/bevin-p-engelward BPE] <br>  
 
| [[20.109(F24):M1D4 | Complete data analysis for &gamma;H2AX experiment]]<br>  
 
| [[20.109(F24):M1D4 | Complete data analysis for &gamma;H2AX experiment]]<br>  
Line 57: Line 57:
 
|--
 
|--
 
| M1D5
 
| M1D5
| R/F Sep 28/29
+
| R/F Sep 26/27
 
| [http://be.mit.edu/directory/bevin-p-engelward BPE] <br>  
 
| [http://be.mit.edu/directory/bevin-p-engelward BPE] <br>  
 
| [[20.109(F24):M1D5 | Treat cells for CometChip assay]]<br>  
 
| [[20.109(F24):M1D5 | Treat cells for CometChip assay]]<br>  
Line 63: Line 63:
 
|--
 
|--
 
| M1D6
 
| M1D6
| T/W Oct 3/4
+
| T/W Oct 1/2
 
| [http://be.mit.edu/directory/bevin-p-engelward BPE] <br>  
 
| [http://be.mit.edu/directory/bevin-p-engelward BPE] <br>  
 
| [[20.109(F24):M1D6 | Image and analyze data for CometChip assay]]<br>  
 
| [[20.109(F24):M1D6 | Image and analyze data for CometChip assay]]<br>  
Line 69: Line 69:
 
|--
 
|--
 
| M1D7
 
| M1D7
| R/F Oct 5/6
+
| R/F Oct 3/4
 
| [http://be.mit.edu/directory/bevin-p-engelward BPE] <br>  
 
| [http://be.mit.edu/directory/bevin-p-engelward BPE] <br>  
 
| [[20.109(F24):M1D7 | Examine experimental data using statistical methods]]<br>  
 
| [[20.109(F24):M1D7 | Examine experimental data using statistical methods]]<br>  
 
| <font color= #b3351c >'''Laboratory quiz'''</font color> <br> [[20.109(F24):Homework#Due_M1D7|Homework due]]  
 
| <font color= #b3351c >'''Laboratory quiz'''</font color> <br> [[20.109(F24):Homework#Due_M1D7|Homework due]]  
|--
 
|
 
| <font color = 999999>T/W Oct 10/11 </font color>
 
|
 
| <font color = #848585>'''Indigenous Peoples' Day holiday'''</font color>
 
| [[20.109(F24):Data Summary| <font color =  #962c17 >'''Data Summary draft due'''</font color>]] XXX at 10 pm <br>
 
 
|--
 
|--
 
| M2D1
 
| M2D1
| R/F Oct 12/13
+
| T/W Oct 8/9
 
| [http://be.mit.edu/directory/becky-meyer BCM] <br>  
 
| [http://be.mit.edu/directory/becky-meyer BCM] <br>  
 
| [[20.109(F24):M2D1 |Placeholder ]]<br>  
 
| [[20.109(F24):M2D1 |Placeholder ]]<br>  
Line 87: Line 81:
 
|--
 
|--
 
| M2D2
 
| M2D2
| T/W Oct 17/18
+
| R/F Oct 10/11
 
|  <br>  
 
|  <br>  
 
| [[20.109(F24):M2D2 |Placeholder]] <br>  
 
| [[20.109(F24):M2D2 |Placeholder]] <br>  
 
| [[20.109(F24):Homework#Due_M2D2|Homework due]]  
 
| [[20.109(F24):Homework#Due_M2D2|Homework due]]  
 +
|--
 +
|
 +
| <font color = 999999>T/W Oct 15/16 </font color>
 +
|
 +
| <font color = #848585>'''Indigenous Peoples' Day holiday'''</font color>
 +
| [[20.109(F24):Data Summary| <font color =  #962c17 >'''Data Summary draft due'''</font color>]] XXX at 10 pm <br>
 
|--
 
|--
 
| M2D3
 
| M2D3
| R/F Oct 19/20
+
| R/F Oct 17/18
 
| [] <br>  
 
| [] <br>  
 
| [[20.109(F24):M2D3 |Placeholder]] <br>  
 
| [[20.109(F24):M2D3 |Placeholder]] <br>  
 
| [[20.109(F24):Homework#Due_M2D3|Homework due]] <br> [[20.109(F24):Data Summary| <font color =  #962c17 >'''Data Summary revision due'''</font color>]] XXX at 10 pm <br>  
 
| [[20.109(F24):Homework#Due_M2D3|Homework due]] <br> [[20.109(F24):Data Summary| <font color =  #962c17 >'''Data Summary revision due'''</font color>]] XXX at 10 pm <br>  
 +
|--
 +
| M2D4
 +
| T/W Oct 22/23
 +
| [] <br>
 +
| [[20.109(F24):M2D4 |Placeholder]] <br>
 +
| <font color= #b3351c >'''Laboratory quiz'''</font color> <br> [[20.109(F24):Homework#Due_M2D4|Homework due]]
 
|--
 
|--
 
|  
 
|  
| T/W Oct 24/25
+
| R/F Oct 24/25
 
|  
 
|  
 
| [[20.109(F24):Journal article presentation| <font color =  #962c17>'''Journal article presentations'''</font color>]]
 
| [[20.109(F24):Journal article presentation| <font color =  #962c17>'''Journal article presentations'''</font color>]]
Line 105: Line 111:
 
|--
 
|--
 
|  
 
|  
| R/F Oct 26/27
+
| T/W Oct 29/30
 
|  
 
|  
 
| [[20.109(F24):Journal article presentation| <font color =  #962c17 >'''Journal article presentations'''</font color>]]
 
| [[20.109(F24):Journal article presentation| <font color =  #962c17 >'''Journal article presentations'''</font color>]]
 
|  
 
|  
|--
 
| M2D4
 
| T/W Oct 30/Nov 1
 
| [] <br>
 
| [[20.109(F24):M2D4 |Placeholder]] <br>
 
| <font color= #b3351c >'''Laboratory quiz'''</font color> <br> [[20.109(F24):Homework#Due_M2D4|Homework due]]
 
 
|--
 
|--
 
| M2D5
 
| M2D5
| R/F Nov 2/3
+
| R/F Oct 31/Nov 1
 
| [] <br>  
 
| [] <br>  
 
| [[20.109(F24):M2D5 |Placeholder]] <br>  
 
| [[20.109(F24):M2D5 |Placeholder]] <br>  
Line 123: Line 123:
 
|--
 
|--
 
| M2D6
 
| M2D6
| T/W Nov 7/8
+
| T/W Nov 5/6
 
| [] <br>  
 
| [] <br>  
 
| [[20.109(F24):M2D6 |Placeholder]] <br>  
 
| [[20.109(F24):M2D6 |Placeholder]] <br>  
 
| [[20.109(F24):Homework#Due_M2D5|Homework due]]  
 
| [[20.109(F24):Homework#Due_M2D5|Homework due]]  
|--
 
|
 
| <font color = 999999>R/F Nov 9/10 </font color>
 
|
 
| <font color = #848585>'''Veterans' Day holiday'''</font color>
 
|
 
 
|--
 
|--
 
| M2D7
 
| M2D7
| T/W Nov 14/15
+
| R/F Nov 7/8
 
| [] <br>  
 
| [] <br>  
 
| [[20.109(F24):M2D7 |Placeholder]] <br>  
 
| [[20.109(F24):M2D7 |Placeholder]] <br>  
 
| <font color= #b3351c >'''Laboratory quiz'''</font color> <br> [[20.109(F24):Homework#Due_M2D7|Homework due]]  
 
| <font color= #b3351c >'''Laboratory quiz'''</font color> <br> [[20.109(F24):Homework#Due_M2D7|Homework due]]  
 +
|--
 +
|
 +
| <font color = 999999>T/W Nov 12/13 </font color>
 +
|
 +
| <font color = #848585>'''Veterans' Day holiday'''</font color>
 +
|
 
|--
 
|--
 
| M3D1
 
| M3D1
| R/F Nov 16/17
+
| R/F Nov 14/15
 
| [http://be.mit.edu/directory/noreen-lyell NLL]<br>  
 
| [http://be.mit.edu/directory/noreen-lyell NLL]<br>  
 
| [[20.109(F24):M3D1 |Brainstorm ideas for Research proposal presentation]] <br>
 
| [[20.109(F24):M3D1 |Brainstorm ideas for Research proposal presentation]] <br>
 
| [[20.109(F24):Homework#Due_M3D1|Homework due]]  
 
| [[20.109(F24):Homework#Due_M3D1|Homework due]]  
|--
 
|
 
| <font color = 999999>T/W Nov 21/22 </font color>
 
|
 
| <font color = #848585>'''Thanksgiving Day holiday'''</font color>
 
| [[20.109(F24):Research article| <font color =  #962c17 >'''Research article due'''</font color>]]  XXX at 10 pm <br>
 
|--
 
|
 
| <font color = 999999>R/F Nov 23/24 </font color>
 
|
 
| <font color = #848585>'''Thanksgiving Day holiday'''</font color>
 
|
 
 
|--
 
|--
 
| M3D2
 
| M3D2
| T/W Nov 28/29
+
| T/W Nov 19/20
 
| [http://be.mit.edu/directory/angela-belcher AB]<br>  
 
| [http://be.mit.edu/directory/angela-belcher AB]<br>  
 
| [[20.109(F24):M3D2 |Pitch research proposal presentation ideas ]] <br>  
 
| [[20.109(F24):M3D2 |Pitch research proposal presentation ideas ]] <br>  
Line 165: Line 153:
 
|--
 
|--
 
| M3D3
 
| M3D3
| R/F Nov 30/Dec1
+
| R/F Nov 21/22
 
| BE Comm Lab
 
| BE Comm Lab
 
| [[20.109(F24):M3D3 |Develop ideas for Research proposal presentation ]] <br>  
 
| [[20.109(F24):M3D3 |Develop ideas for Research proposal presentation ]] <br>  
 
| [[20.109(F24):Homework#Due_M3D3|Homework due]]<br>
 
| [[20.109(F24):Homework#Due_M3D3|Homework due]]<br>
 +
|--
 +
|
 +
| <font color = 999999>T/W Nov 26/27 </font color>
 +
|
 +
| <font color = #848585>'''Thanksgiving Day holiday'''</font color>
 +
| [[20.109(F24):Research article| <font color =  #962c17 >'''Research article due'''</font color>]]  XXX at 10 pm <br>
 +
|--
 +
|
 +
| <font color = 999999>R/F Nov 28/29 </font color>
 +
|
 +
| <font color = #848585>'''Thanksgiving Day holiday'''</font color>
 +
|
 
|--
 
|--
 
| M3D4
 
| M3D4
| T/W Dec 5/6
+
| T/W Dec 3/4
 
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>  
 
| [http://be.mit.edu/directory/noreen-lyell NLL] <br>  
 
| [[20.109(F24):M3D4 |Participate in Research proposal peer reviews]] <br>  
 
| [[20.109(F24):M3D4 |Participate in Research proposal peer reviews]] <br>  
Line 177: Line 177:
 
|--
 
|--
 
|  
 
|  
| R/F Dec 7/8
+
| R/F Dec 5/6
 
|  
 
|  
 
| [[20.109(F24):Research proposal presentation| <font color =  #962c17 >'''Research proposal presentations'''</font color>]]
 
| [[20.109(F24):Research proposal presentation| <font color =  #962c17 >'''Research proposal presentations'''</font color>]]
Line 183: Line 183:
 
|--
 
|--
 
|  
 
|  
| T Dec 12
+
| T Dec 10
 
| <font color =  #962c17>'''Celebration lunch!'''</font color> <br>
 
| <font color =  #962c17>'''Celebration lunch!'''</font color> <br>
 
|   
 
|   

Revision as of 15:19, 12 June 2024

20.109(F24): Laboratory Fundamentals of Biological Engineering

Fa24 banner image.png

Fall 2024 schedule        FYI        Assignments        Homework        Class data        Communication        Accessibility

       M1: Genomic integrity        M2: Protein engineering        M3: Project design       


Welcome to 20.109! It is our goal to make this class a useful and fun introduction to the experiments and techniques used in biological engineering. Though there is not enough time to show you everything needed to do research, after this class you will feel confident and familiar with some fundamental experimental approaches and laboratory protocols. You will develop good habits at the bench, which will increase the likelihood of success in your work and ensure the health and safety of you and your labmates. By the end of the semester, you will also be well-versed in good scientific practices - through your experience with scientific writing, notebook keeping, and orally presenting data and novel ideas. All of us involved in teaching 20.109 hope you will find it a satisfying challenge and an exciting experience that has lasting value.

SCHEDULE DETAILS:
Lecture times: Tuesday (T) and Thursday (R) 11 - 12 pm in 16-220
Laboratory section times: Tuesday (T) and Thursday (R) 1 - 5 pm or Wednesday (W) and Friday (F) 1 - 5 pm in 56-322

ABSENCE POLICY:
Absences from lecture: Attendance will be recorded for participation points throughout the semester. If absent, student is responsible for all information provided in lecture.
Absences from laboratory: Excused absences should be discussed with the Instructors as soon as possible. Because make-up laboratory time is not provided, attendance in another section may be required to complete the necessary experiments. Unexcused absences will result in a 1/3 of a letter grade deduction from the final grade on the major assignment for the module (for example, a B+ would become a B).

MODULE DATE LECTURER LABORATORY EXPERIMENTS ASSIGNMENTS
R/F Sep 5/6 NLL
Orientation and laboratory tour
M1D1 T/W Sep 10/11 BPE
Learn best practices for mammalian cell culture
Orientation quiz
Homework due
M1D2 R/F Sep 12/13 BPE
Prepare and treat cells for γH2AX experiment
Homework due
M1D3 T/W Sep 17/18 BPE
Use immunoflourescence staining to assess γH2AX experiment
Homework due
R/F Sep 19/20 BE Comm Lab Career Day holiday
M1D4 T/W Sep 24/25 BPE
Complete data analysis for γH2AX experiment
Laboratory quiz
Homework due
M1D5 R/F Sep 26/27 BPE
Treat cells for CometChip assay
Homework due
Research talk due XXX at 10 pm
M1D6 T/W Oct 1/2 BPE
Image and analyze data for CometChip assay
Homework due
M1D7 R/F Oct 3/4 BPE
Examine experimental data using statistical methods
Laboratory quiz
Homework due
M2D1 T/W Oct 8/9 BCM
Placeholder
Homework due
M2D2 R/F Oct 10/11
Placeholder
Homework due
T/W Oct 15/16 Indigenous Peoples' Day holiday Data Summary draft due XXX at 10 pm
M2D3 R/F Oct 17/18 []
Placeholder
Homework due
Data Summary revision due XXX at 10 pm
M2D4 T/W Oct 22/23 []
Placeholder
Laboratory quiz
Homework due
R/F Oct 24/25 Journal article presentations
T/W Oct 29/30 Journal article presentations
M2D5 R/F Oct 31/Nov 1 []
Placeholder
Homework due
M2D6 T/W Nov 5/6 []
Placeholder
Homework due
M2D7 R/F Nov 7/8 []
Placeholder
Laboratory quiz
Homework due
T/W Nov 12/13 Veterans' Day holiday
M3D1 R/F Nov 14/15 NLL
Brainstorm ideas for Research proposal presentation
Homework due
M3D2 T/W Nov 19/20 AB
Pitch research proposal presentation ideas
M3D3 R/F Nov 21/22 BE Comm Lab Develop ideas for Research proposal presentation
Homework due
T/W Nov 26/27 Thanksgiving Day holiday Research article due XXX at 10 pm
R/F Nov 28/29 Thanksgiving Day holiday
M3D4 T/W Dec 3/4 NLL
Participate in Research proposal peer reviews
Homework due
R/F Dec 5/6 Research proposal presentations
T Dec 10 Celebration lunch!