Spring 11:Chemotaxis Assay
Contents
Introduction
For my project I designed and developed an automated microfluidic system using Seymour et al’s microinjector microfluidic device to provide a high through-put method of acquiring bacterial chemotaxis parameters. The microinjector device was chosen for its simple design, diverse application to both fluid-flow and flow-free approaches, and for its ability to measure individual cell kinetics. The development of a faster and systematic device is especially useful in the research of marine microbes’ response to settling dissolved organic matter.
Objective
Further develop Stocker’s microfluidic system that will allow researchers to run chemotaxis assays more efficiently for high though-put assays. The main improvement to Stocker's system will be the use of pneumatic pressures instead of syringe fluid pressures to control fluid flow to set up the chemoatractant and microorganism bands. The pneumatic pressure will be computer controlled to to allow precise and reproducible experiments as well as increased experimental throughput.
Spring 20.345 Project Assignments
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Readings and Resources
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Microinjector Microfluidic Device
Flow-free, or ‘stopped-flow’, chemotaxis assays allow for the analysis of individual bacterial movement in the absence of shear forces and relies on natural diffusion to generate a gradient. In this approach, fluid flow is only used to set up an initial gradient, but is stopped, allowing the gradient to evolve by diffusion alone. These devices produce unsteady gradients that are advantageous in representing environmental conditions of nutrients especially in marine bacteria and in characterizing bacterial responses to wide range of concentration and gradients within a single experiement. The bacterial distribution is measured by recording the kinetic paths of individual bacteria using videomicroscopy. An example of this approach is Seymour et al’s microinjector microfluidic device
Microscope
The imaging microscope will be a brightfield and fluorescent microscope as shown in Fig 3. A CCD camera will acquire images at a given rate and the kinetic paths will be tracked using particle tracking algorithms.
- Camera (Allied Manta G032B): 7.4um sqr pixels, 656 x 492 pixels
- Field of View: 484um x 366um (10x objective w/200mm lens => 10x magnification)
Pneumatic System Design
The pneumatic system is composed of manual pressure regulators
Basic Design
The fundamental principle behind this system is that changes in pressures causes fluid flow and when the pressure equalize to the same 'ground' pressure, fluid flow should stop. By this approach
Circuit Element Design
Experiment 1:
- By Emmanuel Quiroz