Difference between revisions of "20.309 Main Page"
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* Reserve a lab station here: [http://measurebiology.org/reservations/Web/schedule.php Bioinstrumentation Lab reservation system] | * Reserve a lab station here: [http://measurebiology.org/reservations/Web/schedule.php Bioinstrumentation Lab reservation system] | ||
− | == 20.309 | + | == 20.309 master schedule== |
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| <font color=#04B45F>10/8/17</font color> | | <font color=#04B45F>10/8/17</font color> | ||
| Assignment 4 | | Assignment 4 | ||
− | | | + | |{{Template:Assignment 4 navigation}} |
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− | + | * [[Physical optics and resolution]] | |
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| <font color=#04B45F>10/15/17</font color> | | <font color=#04B45F>10/15/17</font color> | ||
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===Module 2: Signals and Systems=== | ===Module 2: Signals and Systems=== | ||
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− | * [[DNA Melting | + | * [[DNA Melting Thermodynamics]] |
* [[Real electronics]] | * [[Real electronics]] | ||
* [[Impedance Analysis|Impedance analysis]] | * [[Impedance Analysis|Impedance analysis]] | ||
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* [[Assignment 8, Part 2: lock-in amplifier and temperature control| Part 2: modify your instrument]] | * [[Assignment 8, Part 2: lock-in amplifier and temperature control| Part 2: modify your instrument]] | ||
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* [http://mfold.rna.albany.edu/?q=DINAMelt/Hybrid2 DINAMelt Web Server] | * [http://mfold.rna.albany.edu/?q=DINAMelt/Hybrid2 DINAMelt Web Server] | ||
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| [[Assignment 9 Overview]] | | [[Assignment 9 Overview]] | ||
* [[Assignment 9, Part 1: model function|Part 1: writing the model function]] | * [[Assignment 9, Part 1: model function|Part 1: writing the model function]] | ||
− | * [[Assignment 9, Part 2: Simulating DNA melting data and testing the model function| | + | * [[Assignment 9, Part 2: Simulating DNA melting data and testing the model function|Part 2: test your code with simulated data]] |
+ | * [[Assignment 9, Part 3: Fitting your data|Part 3: fitting your data]] | ||
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+ | * [[DNA Melting: Model function and parameter estimation by nonlinear regression]] | ||
+ | * [[DNA Melting Thermodynamics]] | ||
+ | * [[DNA melting: Identifying the unknown sample]] | ||
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| <font color=#04B45F>12/3/17</font color> | | <font color=#04B45F>12/3/17</font color> | ||
| Assignment 10 | | Assignment 10 | ||
− | | | + | | [[Assignment 10 Overview|Assignment 10: measure DNA melting curves and identify your unknown sample.]] |
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+ | * [[DNA melting: Identifying the unknown sample]] | ||
+ | * [[DNA Melting: DNA Sequences]] | ||
+ | * [[DNA Melting: Model function and parameter estimation by nonlinear regression]] | ||
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| <font color=#04B45F>12/7/17</font color> | | <font color=#04B45F>12/7/17</font color> |
Revision as of 23:41, 13 November 2017
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20.309 course information
- 20.309 course information
- lab safety
- Reserve a lab station here: Bioinstrumentation Lab reservation system
20.309 master schedule
Module 1: Optics & Microscopy
Important dates | Assignment due | Assignment page links | Useful resources |
9/17/17 | Assignment 1 |
| |
9/24/17 | Assignment 2 | Assignment 2 Overview | |
9/28/17 | Quiz 1 (in lecture) | ||
10/1/17 | Assignment 3 | Assignment 3 Overview | |
10/8/17 | Assignment 4 | ||
10/15/17 | Assignment 5 | Assignment 5 Overview | |
10/19/17 | Exam 1 (at 7:30pm in 4-163) |
Module 2: Signals and Systems
Important dates | Assignment due | Assignment page links | Useful resources |
10/29/17 | Assignment 6 | Assignment 6 Overview | |
11/2/17 | Quiz 2 (in lecture) | ||
11/5/17 | Assignment 7 | Assignment 7 Overview | |
11/12/17 | Assignment 8 | Assignment 8 Overview | |
11/19/17 | Assignment 9 | Assignment 9 Overview | |
12/3/17 | Assignment 10 | Assignment 10: measure DNA melting curves and identify your unknown sample. | |
12/7/17 | Exam 2 (at 7:30pm in 4-163) | ||
12/13/17 | Assignment 11 |
Optics and microscopy resources
Background reading
- Geometrical optics and ray tracing
- Physical optics and resolution
- Optical aberrations
- Aperture and field stops
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Code examples and simulations
- Converting Gaussian fit to Rayleigh resolution
- MATLAB: Estimating resolution from a PSF slide image
- Matlab: Scalebars
- Calculating MSD and Diffusion Coefficients
Electronics resources
Background reading
- Electronics primer
- Khan Academy Material, esp. "Ideal Circuit Elements" and "Voltage Divider"
- Real electronics
- Impedance analysis
- Transfer functions and Bode plots
- Complex number review
- Input and output impedance
Code examples and simulations
- DNA Melting: Simulating DNA Melting - Basics
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA Melting: Model function and parameter estimation by nonlinear regression
Reference materials
Limits of detection mini-lab
- Lab Manual: Limits of Detection
- Lab Manual: Atomic Force Microscopy (AFM)
- Limits of Detection: Data Sessions