Difference between revisions of "20.309 Main Page"

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* Reserve a lab station here: [http://measurebiology.org/reservations/Web/schedule.php Bioinstrumentation Lab reservation system]
 
* Reserve a lab station here: [http://measurebiology.org/reservations/Web/schedule.php Bioinstrumentation Lab reservation system]
  
== 20.309 Master schedule==
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== 20.309 master schedule==
  
 
<div style="padding: 10px; width: 740px; border: 5px solid #000FFF;">
 
<div style="padding: 10px; width: 740px; border: 5px solid #000FFF;">
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| Assignment 2
 
| Assignment 2
 
| [[Assignment 2: fluorescence microscopy| Assignment 2 Overview]]
 
| [[Assignment 2: fluorescence microscopy| Assignment 2 Overview]]
* [[Assignment 2 Part 1: Noise in images]]
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* [[Assignment 2 Part 1: Noise in images|Part 1: Noise in images]]
* [[Assignment 2 Part 2: Fluorescence microscopy]]
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* [[Assignment 2 Part 2: Fluorescence microscopy|Part 2: Fluorescence microscopy]]
* [[Assignment 2 Part 3: Build an epi-illuminator for your microscope]]
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* [[Assignment 2 Part 3: Build an epi-illuminator for your microscope|Part 3: Build an epi-illuminator for your microscope]]
 
|
 
|
 
* [[Geometrical optics and ray tracing]]
 
* [[Geometrical optics and ray tracing]]
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|
 
|
 
*[[Flat-field correction|Flat-field correction of non-uniform illumination]]
 
*[[Flat-field correction|Flat-field correction of non-uniform illumination]]
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*[[Matlab: Scalebars]]
 
|-
 
|-
 
|  <font color=#04B45F>10/8/17</font color>
 
|  <font color=#04B45F>10/8/17</font color>
 
| Assignment 4
 
| Assignment 4
|  
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|{{Template:Assignment 4 navigation}}
|* [[Physical optics and resolution]]
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|
 +
* [[Physical optics and resolution]]
 
|-
 
|-
 
|  <font color=#04B45F>10/15/17</font color>
 
|  <font color=#04B45F>10/15/17</font color>
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|-
 
|-
 
|}
 
|}
</div>
 
 
<br />
 
<br />
<div style="padding: 10px; width: 740px; border: 5px solid #000FFF;">
 
  
 
===Module 2: Signals and Systems===
 
===Module 2: Signals and Systems===
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|
 
|
* [[DNA Melting: Simulating DNA Melting - Basics]]
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* [[DNA Melting Thermodynamics]]
 
* [[Real electronics]]
 
* [[Real electronics]]
 
* [[Impedance Analysis|Impedance analysis]]
 
* [[Impedance Analysis|Impedance analysis]]
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* [[Assignment 8, Part 2: lock-in amplifier and temperature control| Part 2: modify your instrument]]
 
* [[Assignment 8, Part 2: lock-in amplifier and temperature control| Part 2: modify your instrument]]
 
|
 
|
* [[DNA Melting: Simulating DNA Melting - Intermediate Topics]]
 
* [[DNA Melting: Model function and parameter estimation by nonlinear regression]]
 
* [[DNA Melting Thermodynamics]]
 
 
* [http://mfold.rna.albany.edu/?q=DINAMelt/Hybrid2 DINAMelt Web Server]
 
* [http://mfold.rna.albany.edu/?q=DINAMelt/Hybrid2 DINAMelt Web Server]
 
|-
 
|-
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| [[Assignment 9 Overview]]
 
| [[Assignment 9 Overview]]
 
* [[Assignment 9, Part 1: model function|Part 1: writing the model function]]
 
* [[Assignment 9, Part 1: model function|Part 1: writing the model function]]
* [[Assignment 9, Part 2: Simulating DNA melting data and testing the model function|testing the model with simulated data]]
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* [[Assignment 9, Part 2: Simulating DNA melting data and testing the model function|Part 2: test your code with simulated data]]
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* [[Assignment 9, Part 3: Fitting your data|Part 3: fitting your data]]
  
 
|
 
|
 +
* [[DNA Melting: Model function and parameter estimation by nonlinear regression]]
 +
* [[DNA Melting Thermodynamics]]
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* [[DNA melting: Identifying the unknown sample]]
 
|-
 
|-
 
|  <font color=#04B45F>12/3/17</font color>
 
|  <font color=#04B45F>12/3/17</font color>
 
| Assignment 10
 
| Assignment 10
|  
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| [[Assignment 10 Overview|Assignment 10: measure DNA melting curves and identify your unknown sample.]]
 +
 
 
|
 
|
 +
* [[DNA melting: Identifying the unknown sample]]
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* [[DNA Melting: DNA Sequences]]
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* [[DNA Melting: Model function and parameter estimation by nonlinear regression]]
 
|-
 
|-
 
|  <font color=#04B45F>12/7/17</font color>
 
|  <font color=#04B45F>12/7/17</font color>

Revision as of 23:41, 13 November 2017

20.309: Biological Instrumentation and Measurement

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20.309 course information

20.309 master schedule

Module 1: Optics & Microscopy

Important dates Assignment due Assignment page links Useful resources
9/17/17 Assignment 1

Assignment 1 Overview

9/24/17 Assignment 2 Assignment 2 Overview
9/28/17 Quiz 1 (in lecture)
10/1/17 Assignment 3 Assignment 3 Overview
10/8/17 Assignment 4
10/15/17 Assignment 5 Assignment 5 Overview
10/19/17 Exam 1 (at 7:30pm in 4-163)


Module 2: Signals and Systems

Important dates Assignment due Assignment page links Useful resources
10/29/17 Assignment 6 Assignment 6 Overview
11/2/17 Quiz 2 (in lecture)
11/5/17 Assignment 7 Assignment 7 Overview
11/12/17 Assignment 8 Assignment 8 Overview
11/19/17 Assignment 9 Assignment 9 Overview
12/3/17 Assignment 10 Assignment 10: measure DNA melting curves and identify your unknown sample.
12/7/17 Exam 2 (at 7:30pm in 4-163)
12/13/17 Assignment 11

Optics and microscopy resources

Background reading

Code examples and simulations

Electronics resources

Background reading

Code examples and simulations

Reference materials

Limits of detection mini-lab

MRI mini-lab

(Kept for historical reasons.)