Difference between revisions of "20.309 Main Page"
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** [http://www.microscopyu.com/articles/formulas/formulasresolution.html Resolution] | ** [http://www.microscopyu.com/articles/formulas/formulasresolution.html Resolution] | ||
* [[Understanding log plots]] | * [[Understanding log plots]] | ||
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| <font color=#04B45F>9/24/17</font color> | | <font color=#04B45F>9/24/17</font color> | ||
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* [[Assignment 3, Part 2: experimental design with fluorescence| Part 2: choosing filters]] | * [[Assignment 3, Part 2: experimental design with fluorescence| Part 2: choosing filters]] | ||
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| + | *[[Flat-field correction|Flat-field correction of non-uniform illumination]] | ||
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| <font color=#04B45F>10/8/17</font color> | | <font color=#04B45F>10/8/17</font color> | ||
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* [[Assignment 5, Part 2: live cell particle tracking of endocytosed beads| Part 2:]] Live cell particle tracking of endocytosed beads. | * [[Assignment 5, Part 2: live cell particle tracking of endocytosed beads| Part 2:]] Live cell particle tracking of endocytosed beads. | ||
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| + | * [[Converting Gaussian fit to Rayleigh resolution]] | ||
| + | * [[MATLAB: Estimating resolution from a PSF slide image]] | ||
| + | * [[Matlab: Scalebars]] | ||
| + | * [[Calculating MSD and Diffusion Coefficients]] | ||
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| <font color=#04B45F>10/19/17</font color> | | <font color=#04B45F>10/19/17</font color> | ||
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* [[Assignment 7, Part 2: measure temperature and fluorescence| Part 2: measure temperature and fluorescence]] | * [[Assignment 7, Part 2: measure temperature and fluorescence| Part 2: measure temperature and fluorescence]] | ||
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| + | * [[DNA Melting: Simulating DNA Melting - Basics]] | ||
| + | * [[Real electronics]] | ||
| + | * [[Impedance Analysis|Impedance analysis]] | ||
| + | * [[Bode plots|Transfer functions and Bode plots]] | ||
| + | * [[Complex Number Review|Complex number review]] | ||
| + | * [[Input and output impedance]] | ||
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| <font color=#04B45F>11/12/17</font color> | | <font color=#04B45F>11/12/17</font color> | ||
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* [[Assignment 8, Part 1: convolution|Part 1: convolution and lock-in amplifiers]] | * [[Assignment 8, Part 1: convolution|Part 1: convolution and lock-in amplifiers]] | ||
* [[Assignment 8, Part 2: lock-in amplifier and temperature control| Part 2: modify your instrument]] | * [[Assignment 8, Part 2: lock-in amplifier and temperature control| Part 2: modify your instrument]] | ||
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| + | * [[DNA Melting: Simulating DNA Melting - Intermediate Topics]] | ||
| + | * [[DNA Melting: Model function and parameter estimation by nonlinear regression]] | ||
| + | * [[DNA Melting Thermodynamics]] | ||
| + | * [http://mfold.rna.albany.edu/?q=DINAMelt/Hybrid2 DINAMelt Web Server] | ||
|- | |- | ||
| <font color=#04B45F>11/19/17</font color> | | <font color=#04B45F>11/19/17</font color> | ||
Revision as of 13:35, 22 August 2017
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20.309 Master Schedule
| Important dates | Assignment due | Assignment page links | Useful resources |
| 9/17/17 | Assignment 1 |
| |
| 9/24/17 | Assignment 2 | Assignment 2 Overview | |
| 9/28/17 | Quiz 1 (in lecture) | ||
| 10/1/17 | Assignment 3 | Assignment 3 Overview | |
| 10/8/17 | Assignment 4 | ||
| 10/15/17 | Assignment 5 | Assignment 5 Overview | |
| 10/19/17 | Exam 1 (at 7:30pm in room ____) | ||
| 10/29/17 | Assignment 6 | Assignment 6 Overview | |
| 11/2/17 | Quiz 2 (in lecture) | ||
| 11/5/17 | Assignment 7 | Assignment 7 Overview | |
| 11/12/17 | Assignment 8 | Assignment 8 Overview | |
| 11/19/17 | Assignment 9 | Assignment 9 Overview | |
| 12/3/17 | Assignment 10 | ||
| 12/7/17 | Exam 2 (at 7:30pm in room _____) | ||
| 12/13/17 | Assignment 11 |
Contents
20.309 course information
Reserve a lab station here: Bioinstrumentation Lab reservation system
Optics bootcamp
Lab manual
Background reading
- Geometrical optics and ray tracing
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Optical microscopy lab
Code examples and simulations
- Converting Gaussian fit to Rayleigh resolution
- MATLAB: Estimating resolution from a PSF slide image
- Matlab: Scalebars
- Calculating MSD and Diffusion Coefficients
Background reading
- Geometrical optics and ray tracing
- Physical optics and resolution
- Optical aberrations
- Aperture and field stops
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Electronics bootcamp
Lab manual
Background reading
- Electronics primer
- Khan Academy Material, esp. "Ideal Circuit Elements" and "Voltage Divider"
- Real electronics
- Impedance analysis
- Transfer functions and Bode plots
- Complex number review
- Input and output impedance
DNA melting lab
Lab manuals
- Lab Manual:Measuring DNA Melting Curves
- DNA Melting Part 1: Measuring Temperature and Fluorescence
- DNA Melting Report Requirements for Part 1
- DNA Melting: Model function and parameter estimation by nonlinear regression
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA melting: Identifying the unknown sample
- DNA Melting Part 2: Lock-in Amplifier and Temperature Control
- DNA Melting Report Requirements for Part 2
Code examples and simulations
- DNA Melting: Simulating DNA Melting - Basics
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA Melting: Model function and parameter estimation by nonlinear regression
Reference materials
Background reading
Limits of detection mini-lab
- Lab Manual: Limits of Detection
- Lab Manual: Atomic Force Microscopy (AFM)
- Limits of Detection: Data Sessions
