Difference between revisions of "20.309 Main Page"
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| − | |Week | + | | Week 15: May 14 - 18 |
| − | | | + | | Participate in "measuring biological forces" demos, enjoy cupcakes and 20.345 posters in the lab on Thursday 12-1pm |
| − | | | + | | Attend a demo: W 1-2:30 or 3-4:40, R 1-2:30 or 3-4:30 |
| − | + | Take apart your DNA melters! | |
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* [[Lab Manual: Atomic Force Microscopy (AFM)]] | * [[Lab Manual: Atomic Force Microscopy (AFM)]] | ||
* [[Limits of Detection: Data Sessions]] | * [[Limits of Detection: Data Sessions]] | ||
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| + | | No more class! | ||
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Revision as of 14:20, 15 May 2017
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20.309 This week and next
| Week | Summary | Assignments due | Lab Manual | Resources | |
| Week 15: May 14 - 18 | Participate in "measuring biological forces" demos, enjoy cupcakes and 20.345 posters in the lab on Thursday 12-1pm | Attend a demo: W 1-2:30 or 3-4:40, R 1-2:30 or 3-4:30
Take apart your DNA melters! |
|||
| No more class! |
Contents
20.309 course information
Reserve a lab station here: Bioinstrumentation Lab reservation system
Optics bootcamp
Lab manual
Background reading
- Geometrical optics and ray tracing
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
Optical microscopy lab
Code examples and simulations
- Converting Gaussian fit to Rayleigh resolution
- MATLAB: Estimating resolution from a PSF slide image
- Matlab: Scalebars
- Calculating MSD and Diffusion Coefficients
Background reading
- Geometrical optics and ray tracing
- Physical optics and resolution
- Optical aberrations
- Aperture and field stops
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Electronics bootcamp
Lab manual
Background reading
- Electronics primer
- Khan Academy Material, esp. "Ideal Circuit Elements" and "Voltage Divider"
- Real electronics
- Impedance analysis
- Transfer functions and Bode plots
- Complex number review
- Input and output impedance
DNA melting lab
Lab manuals
- Lab Manual:Measuring DNA Melting Curves
- DNA Melting Part 1: Measuring Temperature and Fluorescence
- DNA Melting Report Requirements for Part 1
- DNA Melting: Model function and parameter estimation by nonlinear regression
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA melting: Identifying the unknown sample
- DNA Melting Part 2: Lock-in Amplifier and Temperature Control
- DNA Melting Report Requirements for Part 2
Code examples and simulations
- DNA Melting: Simulating DNA Melting - Basics
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA Melting: Model function and parameter estimation by nonlinear regression
Reference materials
Background reading
Limits of detection mini-lab
- Lab Manual: Limits of Detection
- Lab Manual: Atomic Force Microscopy (AFM)
- Limits of Detection: Data Sessions
