Difference between revisions of "20.109(S23):Class data"

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Revision as of 19:39, 20 April 2023

20.109(S23): Laboratory Fundamentals of Biological Engineering

Sp23 banner image v2.png

Spring 2023 schedule        FYI        Assignments        Homework        Class data        Communication        Accessibility

       M1: Drug discovery        M2: Protein engineering        M3: Project design       


Module 1: Drug discovery

SDS-PAGE

T/R

Red Team: Media:TR Red S23M1D3.jpg
Orange Team: Media:TR Orange S23M1D3.jpg
Yellow Team: Media:TR Yellow S23M1D3.jpg
Green Team: Media:TR Green S23M1D3.jpg
Blue Team: Media:TR Blue S23M1D3.jpg
Pink Team: Media:TR Pink S23M1D3.jpg
Purple Team: Media:TR Purple S23M1D3.jpg

W/F

Dropbox Link : https://www.dropbox.com/sh/1p3sfs2487pkwr0/AAAAA-W0W6vPcXcfcp2nV2TPa?dl=0

BCA

W/F

Media: Sp23 W F BCA.xlsx

Western Blot

W/F

Dropbox Link: https://www.dropbox.com/scl/fo/xlv4yz02oq2pfhka7mcmt/h?dl=0&rlkey=x1g0jqms054n0ycy3s2atbzrf

SMM

SMM results

Module 2: Protein engineering

Mutagenesis

T/R

Team Mutation (eg. S301L) Forward primer Reverse primer
TR red Y276C TGGCAGATGTgTATTAACACTG AGCGTCACTGAACTTTTTC
TR orange Y276C TTGGCAGATGtgtATTAACACTG GCGTCACTGAACTTTTTC
TR yellow Y276C GGCAGATGTAcATTAACACTG AAGCGTCACTGAACTTTTTC
TR green Y352C GATTGATTGGtgtGCTGATATTATTG ATCTTTCTCCCTGTCGAC
TR blue Y276C TGGCAGATGTgTATTAACACTG AGCGTCACTGAACTTTTTC
TR pink D354C TTGGTATGCTtgtATTATTGGTACTGG TCAATCATCTTTCTCCCTG
TR purple Y276C TGGCAGATGTgTATTAACACTG AGCGTCACTGAACTTTTTC

T/R Sequencing [here]

W/F

Team Mutation (eg. S301L) Forward primer Reverse primer
WF red V281C TAACACTGCAtgTGCAGTTTCCCTTC ATATACATCTGCCAAGCG
WF orange I349C GAGAAAGATGtgTGATTGGTATGCTGATATTATTG CCTGTCGACCTTTTTTTAG
WF yellow R405C TTTCGTTTTGtgtGAAGTGTACTTCCG CCGTCCAAAAACCCAATTAAAC 
WF green D271C AAAGTTCAGTTGCGCTTGGCAGATGTATATTAACACTGCAGTTGC (AAAGTTCAGTtgcGCTTGGCAGATG) TTCAATCTTGGATTACTACCTGTAGTTTCTCCGGTGTAAGGTGGA (TTCAATCTTGGATTACTACCTG)
WF blue Y408C
WF pink D400C ATTGGGTTTTTGtgCGGTTTCGTTTTG (TGGGTTTTTGtgcGGTTTCGTTTTG) TAAACCTGTGTATGTACCGATAATCAACCACC (ATTAAACCTGTGTATGTACC)
WF purple D350C AAAGATGATTtgtTGGTATGCTGATATTATTGGTAC CTCCCTGTCGACCTTTTTTTAG

WF Sequencing here

Immunofluorescence Data

Pilot Immunofluorescence Data [[1]]

ICP-OES data

T/R

Raw ICP-OES data [here]

Team Fe (ppm)/ Wavelength Cd (ppm)/ Wavelength O.D.
TR red 2.62 ppm / 240.489 nm 7.58 ppm / 361.287 nm
TR orange
TR yellow 11.75 ppm / 373.713 nm 11.35 ppm / 346.766 nm 1.529
TR green 11.91 ppm / 373.713 nm 11.50 ppm / 479.991 nm 1.495
TR blue 4.66 ppm / 259.837 nm 11.52 ppm /479.999 nm 1.546
TR pink 4.03ppm / 238.863nm 10.52ppm / 232.929nm 1.581
TR purple
TR WT 1
TR Fet4 1.28

W/F

Raw ICP-OES data [here]

Team Fe (ppm)/ Wavelength Cd (ppm)/ Wavelength O.D.
WF red
WF orange
WF yellow
WF green
WF blue
WF pink
WF purple
WF WT 1.18
WF Fet4 1.4

Cytotoxicity data

[TR section]

[WF section]