Difference between revisions of "20.109(F23):Fall 2023 schedule"

From Course Wiki
Jump to: navigation, search
Line 47: Line 47:
 
| R/F Sep 21/22
 
| R/F Sep 21/22
 
| BE Comm Lab
 
| BE Comm Lab
| <font color = 999999>'''Career Day holiday'''</font color>
+
| <font color = #a24d0a>'''Career Day holiday'''</font color>
 
|   
 
|   
 
|--
 
|--
Line 77: Line 77:
 
| <font color = 999999>T/W Oct 10/11 </font color>
 
| <font color = 999999>T/W Oct 10/11 </font color>
 
|  
 
|  
| <font color = #642664>'''Indigenous Peoples' Day holiday'''</font color>
+
| <font color = #a24d0a>'''Indigenous Peoples' Day holiday'''</font color>
 
| [[20.109(F23):Data Summary| <font color =  #b3251c>'''Data Summary draft due'''</font color>]] Wed, Oct 11 at 10 pm <br> [ Blog post due] Thu, Oct 12 at 10 pm
 
| [[20.109(F23):Data Summary| <font color =  #b3251c>'''Data Summary draft due'''</font color>]] Wed, Oct 11 at 10 pm <br> [ Blog post due] Thu, Oct 12 at 10 pm
 
|--
 
|--
 
| M2D1
 
| M2D1
| R/F Oct 13/14
+
| R/F Oct 12/13
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> [[Media:L01 Intro Drug Discovery 20.109 Niles (presented).pdf | Lecture slides]]
+
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br>  
| [[20.109(F22):M2D1 |Complete in-silico cloning of protein expression plasmid]] <br> [[Media:Fa22 M2D1 bcm marked.pdf | T/R prelab]] <br> [[Media:Fa22_M2D1_jz.pdf | W/F prelab ]]
+
| [[20.109(F23):M2D1 | Placeholder]] <br>  
| [[20.109(F22):Homework#Due_M2D1|Homework due]]  
+
| [[20.109(F23):Homework#Due_M2D1|Homework due]]  
 
|--
 
|--
 
| M2D2
 
| M2D2
| T/W Oct 18/19
+
| T/W Oct 17/18
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> [[Media:L02 Therapeutic Target Selection 20.109 (Niles-presented).pdf | Lecture Slides]]
+
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br>  
| [[20.109(F22):M2D2 |Perform protein purification protocol]] <br> [[Media:Fa22 M2D2 bcm marked.pdf | T/R prelab]]<br> [[Media:Fa22 M2D2 jz.pdf | W/F prelab]]
+
| [[20.109(F23):M2D2 | Placeholder]] <br>  
| [[20.109(F22):Homework#Due_M2D2|Homework due]]  
+
| [[20.109(F23):Homework#Due_M2D2|Homework due]]  
 
|--
 
|--
 
| M2D3
 
| M2D3
| R/F Oct 20/21
+
| R/F Oct 19/20
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> [[Media:L03 Choosing an Intervention Modality 20.109 (Niles-presented).pdf| Lecture slides]]
+
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br>  
| [[20.109(F22):M2D3 |Assess purity and concentration of purified protein]] <br> [[Media:Fa22 M2D3 bcm.pdf | T/R prelab]] <br> [[Media:Fa22 M2D3 jz.pdf | W/F prelab]]
+
| [[20.109(F23):M2D3 | Placeholder]] <br>  
| [[20.109(F22):Homework#Due_M2D3|Homework due]] <br> [[20.109(F22):Data Summary| <font color =  #b3251c>'''Data Summary revision due'''</font color>]] Sat, Oct 22 at 10 pm <br>  
+
| [[20.109(F23):Homework#Due_M2D3|Homework due]] <br> [[20.109(F23):Data Summary| <font color =  #b3251c>'''Data Summary revision due'''</font color>]] Sat, Oct 21 at 10 pm <br>  
 
|--
 
|--
| M2D4
+
|  
| T/W Oct 25/26
+
| T/W Oct 24/25
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> [[Media:L04 Introduction to Screening I.pdf|Lecture slides]]
+
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br>  
| [[20.109(F22):M2D4 |Review small molecule microarray (SMM) technology and data analysis used to identify hits]] <br> [[Media:Fa22 M2D4 bcm marked.pdf | T/R prelab]] <br> [[Media:Fa22 M2D4 jz.pdf | W/F prelab]]
+
| [[20.109(F23): <br>  
| <font color= #963d97 >'''Laboratory quiz'''</font color> <br> [[20.109(F22):Homework#Due_M2D4|Homework due]]  
+
| <font color= #963d97 >'''Laboratory quiz'''</font color> <br> [[20.109(F23):Homework#Due_M2D4|Homework due]]  
 
|--
 
|--
| M2D5
+
|  
| R/F Oct 27/28
+
| R/F Oct 26/27
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> [[Media:L05 Intro to Phenotypic Screening (Niles-presented).pdf|Lecture slides]]
+
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br>  
| [[20.109(F22):M2D5 |Prepare protein for functional assay]] <br> [[Media:Fa22 M2D5 bcm.pdf | T/R prelab]] <br> [[Media:Fa22 M2D5 jz.pdf | W/F prelab]]
+
| [[20.109(F23): <br>
| [[20.109(F22):Homework#Due_M2D5|Homework due]]  
+
| [[20.109(F23):Homework#Due_M2D5|Homework due]]  
 
|--
 
|--
 
|  
 
|  
| T/W Nov 1/2
+
| T/W Oct 30/ Nov 1
 
|  
 
|  
| [[20.109(F22):Journal article presentation| <font color =  #b3251c>'''Journal article presentations'''</font color>]]
+
| [[20.109(F23):Journal article presentation| <font color =  #b3251c>'''Journal article presentations'''</font color>]]
 
|  
 
|  
 
|--
 
|--
 
|  
 
|  
| R/F Nov 3/4
+
| R/F Nov 2/3
 
|  
 
|  
| [[20.109(F22):Journal article presentation| <font color =  #b3251c>'''Journal article presentations'''</font color>]]
+
| [[20.109(F23):Journal article presentation| <font color =  #b3251c>'''Journal article presentations'''</font color>]]
| [https://app.slack.com/client/T01KU1VLZQB/C043RJYMC3B Blog post due] Sat, Nov 5 at 10 pm
+
| [ Blog post due] Sat, XYZ at 10 pm
 
|--
 
|--
| M2D6
+
|  
| T/W Nov 8/9
+
| T/W Nov 7/8
 
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br>  
 
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br>  
| [[20.109(F22):M2D6 |Complete data analysis of functional assay results]] <br> [[Media:Fa22 M2D6 bcm.pdf | T/R Prelab]] <br> [[Media:Fa22 M2D6 jz.pdf | W/F Prelab]] <br>
+
| [[20.109(F23): <br>
| [[20.109(F22):Homework#Due_M2D5|Homework due]]  
+
| [[20.109(F23):Homework#Due_M2D5|Homework due]]  
 
|--
 
|--
 
|  
 
|  
| <font color = 999999>R/F Nov 10/11 </font color>
+
| <font color = 999999>R/F Nov 9/10 </font color>
 
|  
 
|  
| <font color = #642664>'''Veterans' Day holiday'''</font color>
+
| <font color = #a24d0a>'''Veterans' Day holiday'''</font color>
 
|  
 
|  
 
|--
 
|--
 
| M2D7
 
| M2D7
| T/W Nov 15/16
+
| T/W Nov 14/15
 
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br>  
 
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br>  
| [[20.109(F22):M2D7 |Evaluate protein structures]] <br> [[Media:Fa22 RA discussion TR notes.pdf|T/R Prelab]] <br> [[Media:Fa22 RA discussion WF notes.pdf|W/F prelab]]
+
| [[20.109(F23):M2D7 | Placeholder]] <br>  
| <font color= #963d97 >'''Laboratory quiz'''</font color> <br> [[20.109(F22):Homework#Due_M2D7|Homework due]]  
+
| <font color= #d57830 >'''Laboratory quiz'''</font color> <br> [[20.109(F23):Homework#Due_M2D7|Homework due]]  
 
|--
 
|--
 
| M3D1
 
| M3D1
| R/F Nov 17/18
+
| R/F Nov 16/17
 
| [http://be.mit.edu/directory/noreen-lyell NLL]<br>  
 
| [http://be.mit.edu/directory/noreen-lyell NLL]<br>  
| [[20.109(F22):M3D1 |Brainstorm ideas for Research proposal presentation]] <br> [[Media:Fa22 M3D1 bcm.pdf|T/R prelab]] <br> [[Media:Fa22 M3D1 bcm.pdf|W/F prelab]]
+
| [[20.109(F23):M3D1 |Brainstorm ideas for Research proposal presentation]] <br>  
| [[20.109(F22):Homework#Due_M3D1|Homework due]] <br>
+
| [[20.109(F23):Homework#Due_M3D1|Homework due]] <br>
 
|--
 
|--
 
|  
 
|  
| <font color = 999999>T/W Nov 22/23 </font color>
+
| <font color = 999999>T/W Nov 21/22 </font color>
 
|  
 
|  
| <font color = #642664>'''Thanksgiving Day holiday'''</font color>
+
| <font color = #a24d0a>'''Thanksgiving Day holiday'''</font color>
| [[20.109(F22):Research article| <font color =  #b3251c>'''Research article due'''</font color>]]  Mon, Nov 21 at 10 pm <br> [https://app.slack.com/client/T01KU1VLZQB/C043RJYMC3B Blog post due] Tue, Nov 22 at 10 pm
+
| [[20.109(F23):Research article| <font color =  #b3251c>'''Research article due'''</font color>]]  Mon, Nov 20 at 10 pm <br> [ Blog post due] Tue, Nov 21 at 10 pm
 
|--
 
|--
 
|  
 
|  
| <font color = 999999>R/F Nov 24/25 </font color>
+
| <font color = 999999>R/F Nov 23/24 </font color>
 
|  
 
|  
| <font color = #642664>'''Thanksgiving Day holiday'''</font color>
+
| <font color = #a24d0a>'''Thanksgiving Day holiday'''</font color>
 
|  
 
|  
 
|--
 
|--

Revision as of 19:59, 25 July 2023

20.109(F23): Laboratory Fundamentals of Biological Engineering

Fa23 banner image.png

Fall 2023 schedule        FYI        Assignments        Homework        Class data        Communication        Accessibility

       M1: Genomic instability        M2: Drug discovery        M3: Project design       


Welcome to 20.109! It is our goal to make this class a useful and fun introduction to the experiments and techniques used in biological engineering. Though there is not enough time to show you everything needed to do research, after this class you will feel confident and familiar with some fundamental experimental approaches and laboratory protocols. You will develop good habits at the bench, which will increase the likelihood of success in your work and ensure the health and safety of you and your labmates. By the end of the semester, you will also be well-versed in good scientific practices - through your experience with scientific writing, notebook keeping, and orally presenting data and novel ideas. All of us involved in teaching 20.109 hope you will find it a satisfying challenge and an exciting experience that has lasting value.

SCHEDULE DETAILS:
Lecture times: Tuesday (T) and Thursday (R) 11 - 12 pm in 16-220
Laboratory section times: Tuesday (T) and Thursday (R) 1 - 5 pm or Wednesday (W) and Friday (F) 1 - 5 pm in 56-322

ABSENCE POLICY:
Absences from lecture: Attendance will be recorded for participation points throughout the semester. If absent, student is responsible for all information provided in lecture.
Absences from laboratory: Excused absences should be discussed with the Instructors as soon as possible. Because make-up laboratory time is not provided, attendance in another section may be required to complete the necessary experiments. Unexcused absences will result in a 1/3 of a letter grade deduction from the final grade on the major assignment for the module (for example, a B+ would become a B).

MODULE DATE LECTURER LABORATORY EXPERIMENTS ASSIGNMENTS
R/F Sep 7/8 NLL
Lecture slides
Orientation and laboratory tour
M1D1 T/W Sep 12/13 BPE
Placeholder
Orientation quiz
Homework due
M1D2 R/F Sep 14/15 BPE
Placeholder
Homework due
M1D3 T/W Sep 19/20 BPE
Placeholder
Homework due
R/F Sep 21/22 BE Comm Lab Career Day holiday
M1D4 T/W Sep 26/27 BPE
Placeholder
Laboratory quiz
Homework due
M1D5 R/F Sep 28/29 BPE
Placeholder
Homework due
Research talk due Sat, Oct 1 at 10 pm
M1D6 T/W Oct 3/4 BPE
Placeholder
Homework due
M1D7 R/F Oct 5/6 BPE
Placeholder
Laboratory quiz
Homework due
T/W Oct 10/11 Indigenous Peoples' Day holiday Data Summary draft due Wed, Oct 11 at 10 pm
[ Blog post due] Thu, Oct 12 at 10 pm
M2D1 R/F Oct 12/13 JCN
Placeholder
Homework due
M2D2 T/W Oct 17/18 JCN
Placeholder
Homework due
M2D3 R/F Oct 19/20 JCN
Placeholder
Homework due
Data Summary revision due Sat, Oct 21 at 10 pm
T/W Oct 24/25 JCN
[[20.109(F23):
Laboratory quiz
Homework due
R/F Oct 26/27 JCN
[[20.109(F23):
Homework due
T/W Oct 30/ Nov 1 Journal article presentations
R/F Nov 2/3 Journal article presentations [ Blog post due] Sat, XYZ at 10 pm
T/W Nov 7/8 JCN
[[20.109(F23):
Homework due
R/F Nov 9/10 Veterans' Day holiday
M2D7 T/W Nov 14/15 JCN
Placeholder
Laboratory quiz
Homework due
M3D1 R/F Nov 16/17 NLL
Brainstorm ideas for Research proposal presentation
Homework due
T/W Nov 21/22 Thanksgiving Day holiday Research article due Mon, Nov 20 at 10 pm
[ Blog post due] Tue, Nov 21 at 10 pm
R/F Nov 23/24 Thanksgiving Day holiday
M3D2 T/W Nov 29/30 AB
Pitch research proposal presentation ideas
M3D3 R/F Dec 1/2 BE Comm Lab Develop ideas for Research proposal presentation
T/R prelab
W/F prelab
Homework due
M3D4 T/W Dec 6/7 NLL
Participate in Research proposal peer reviews
Homework due
R/F Dec 8/9 Research proposal presentations Blog post due Sat, Dec 10 at 10 pm
T Dec 13 Celebration lunch!