Difference between revisions of "20.109(F22):Fall 2022 schedule"
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<font color= #642664 >'''SCHEDULE DETAILS:'''</font color><br> | <font color= #642664 >'''SCHEDULE DETAILS:'''</font color><br> | ||
| − | <font color= #963d97 >'''Lecture times:'''</font color> Tuesday (T) and Thursday (R) 11 - 12 pm in | + | <font color= #963d97 >'''Lecture times:'''</font color> Tuesday (T) and Thursday (R) 11 - 12 pm in 16-220<br> |
<font color= #963d97 >'''Laboratory section times:'''</font color> Tuesday (T) and Thursday (R) 1 - 5 pm or Wednesday (W) and Friday (F) 1 - 5 pm in 56-322<br> | <font color= #963d97 >'''Laboratory section times:'''</font color> Tuesday (T) and Thursday (R) 1 - 5 pm or Wednesday (W) and Friday (F) 1 - 5 pm in 56-322<br> | ||
| Line 22: | Line 22: | ||
| | | | ||
| R/F Sep 8/9 | | R/F Sep 8/9 | ||
| − | | [http://be.mit.edu/directory/noreen-lyell NLL] <br> | + | | [http://be.mit.edu/directory/noreen-lyell NLL] <br> [[Media:Fa22 Orientation lecture stdt.pdf| Lecture slides]] <br> |
| − | | [[20.109(F22):Laboratory tour | Orientation and laboratory tour]]<br> | + | | [[20.109(F22):Laboratory tour | Orientation and laboratory tour]]<br> [[Media:Fa22 M0D0 bcm.pdf| T/R prelab]] <br> [[Media: Fa22_M0D0_jz.pptx| W/F prelab]] |
| | | | ||
| − | |||
| − | |||
|-- | |-- | ||
| M1D1 | | M1D1 | ||
| T/W Sep 13/14 | | T/W Sep 13/14 | ||
| − | | [http://be.mit.edu/directory/bevin-p-engelward BPE] <br> | + | | [http://be.mit.edu/directory/bevin-p-engelward BPE] <br> [[Media:BE109 Fall22 Mod1 Day1 HANDOUT.pdf| Lecture slides]]<br> |
| − | | [[20.109(F22):M1D1 | | + | | [[20.109(F22):M1D1 | Learn best practices for mammalian cell culture]]<br> [[Media:Fa22 M1D1 bcm marked.pdf| T/R prelab]] <br> [[Media:Fa22 M1D1 jz corrected.pdf| W/F prelab corrected]] |
| <font color= #963d97 >'''Orientation quiz'''</font color> <br> [[20.109(F22):Homework#Due_M1D1|Homework due]] | | <font color= #963d97 >'''Orientation quiz'''</font color> <br> [[20.109(F22):Homework#Due_M1D1|Homework due]] | ||
|-- | |-- | ||
| M1D2 | | M1D2 | ||
| R/F Sep 15/16 | | R/F Sep 15/16 | ||
| − | | [http://be.mit.edu/directory/bevin-p-engelward BPE] <br> | + | | [http://be.mit.edu/directory/bevin-p-engelward BPE] <br> [[Media:BE109 Fall22 Mod1 Day2 HANDOUT.pdf| Lecture slides]] |
| − | | [[20.109(F22):M1D2 | | + | | [[20.109(F22):M1D2 |Prepare and treat cells for γ-H2AX experiment]] <br> [[Media:Fa22 M1D2 bcm.pdf | T/R prelab]] <br>[[Media:Fa22 M1D2 jz.pdf | W/F prelab]] |
| [[20.109(F22):Homework#Due_M1D2|Homework due]] | | [[20.109(F22):Homework#Due_M1D2|Homework due]] | ||
|-- | |-- | ||
| M1D3 | | M1D3 | ||
| T/W Sep 20/21 | | T/W Sep 20/21 | ||
| − | | [http://be.mit.edu/directory/bevin-p-engelward BPE] <br> | + | | [http://be.mit.edu/directory/bevin-p-engelward BPE] <br> [[Media:BE109 Fall22 Mod1 Day3 HANDOUT v2.pdf| Lecture slides]] |
| − | | [[20.109(F22):M1D3 | | + | | [[20.109(F22):M1D3 |Use immunoflourescence staining to assess γ-H2AX experiment]] <br> [[Media:Fa22 M1D3 bcm marked.pdf| T/R prelab]] <br> [[Media: Fa22 M1D3 jz.pdf | W/F prelab]] |
| [[20.109(F22):Homework#Due_M1D3|Homework due]] | | [[20.109(F22):Homework#Due_M1D3|Homework due]] | ||
|-- | |-- | ||
| Line 49: | Line 47: | ||
| R/F Sep 22/23 | | R/F Sep 22/23 | ||
| BE Comm Lab | | BE Comm Lab | ||
| − | | <font color = #642664>'''Career Day | + | | <font color = #642664>'''Career Day holiday'''</font color> |
| | | | ||
|-- | |-- | ||
| M1D4 | | M1D4 | ||
| T/W Sep 27/28 | | T/W Sep 27/28 | ||
| − | | [http://be.mit.edu/directory/bevin-p-engelward BPE] <br> | + | | [http://be.mit.edu/directory/bevin-p-engelward BPE] <br> [[Media:BE109 Fall22 Mod1 Day4 HANDOUT.pdf| Lecture slides]] |
| − | | [[20.109(F22):M1D4 | | + | | [[20.109(F22):M1D4 |Complete data analysis for γH2AX experiment]] <br> [[Media:Fa22 M1D4 bcm marked.pdf | T/R prelab]] <br> [[Media:Fa22 M1D4 jz.pdf | W/F prelab]] |
| <font color= #963d97 >'''Laboratory quiz'''</font color> <br> [[20.109(F22):Homework#Due_M1D4|Homework due]] | | <font color= #963d97 >'''Laboratory quiz'''</font color> <br> [[20.109(F22):Homework#Due_M1D4|Homework due]] | ||
|-- | |-- | ||
| M1D5 | | M1D5 | ||
| R/F Sep 29/30 | | R/F Sep 29/30 | ||
| − | | [http://be.mit.edu/directory/bevin-p-engelward BPE] <br> | + | | [http://be.mit.edu/directory/bevin-p-engelward BPE] <br> [[Media:BE109 Fall22 Mod1 Day5 HANDOUT.pdf|Lecture slides]] |
| − | | [[20.109(F22):M1D5 | | + | | [[20.109(F22):M1D5 |Treat cells for CometChip assay]] <br> [[Media:Fa22 M1D5 bcm.pdf | T/R prelab]] <br> [[Media:Fa22 M1D5 jz.pdf | W/F prelab]] <br> [[Media:ImageJ_Guide.pdf | ImageJ Guide]] |
| − | | [[20.109(F22):Homework#Due_M1D5|Homework due]] | + | | [[20.109(F22):Homework#Due_M1D5|Homework due]] <br> [[20.109(F22):Research talk| <font color = #b3251c>'''Research talk due'''</font color>]] Sat, Oct 1 at 10 pm |
|-- | |-- | ||
| M1D6 | | M1D6 | ||
| T/W Oct 4/5 | | T/W Oct 4/5 | ||
| − | | [http://be.mit.edu/directory/bevin-p-engelward BPE] <br> | + | | [http://be.mit.edu/directory/bevin-p-engelward BPE] <br> [[Media:BE109 Fall22 Mod1 Day6 HANDOUT.pdf|Lecture slides]] |
| − | | [[20.109(F22):M1D6 | | + | | [[20.109(F22):M1D6 |Image and analyze data for CometChip assay]] <br> [[Media:Fa22 M1D6 bcm marked.pdf | T/R prelab]] <br> [[Media:Fa22 M1D6 jz.pdf | W/F prelab]]<br> |
| [[20.109(F22):Homework#Due_M1D6|Homework due]] | | [[20.109(F22):Homework#Due_M1D6|Homework due]] | ||
|-- | |-- | ||
| M1D7 | | M1D7 | ||
| R/F Oct 6/7 | | R/F Oct 6/7 | ||
| − | | [http://be.mit.edu/directory/bevin-p-engelward BPE] <br> | + | | [http://be.mit.edu/directory/bevin-p-engelward BPE] <br> [[Media:BE109 Fall22 Mod1 Day7 HANDOUT.pdf|Lecture slides]] <br> [[Media:Board Notes for Lecture 7 from Engelward.pdf|Board notes]] |
| − | | [[20.109(F22):M1D7 | | + | | [[20.109(F22):M1D7 |Examine experimental data using statistical methods]] <br> [[Media:M1D7 marked.pdf | T/R prelab]] <br> [[Media:Fa22 M1D7 jz.pdf | W/F prelab]] <br>[[Media:Fa22 DS Discussion nll tr.pdf| Data Summary discussion]] <br> |
| <font color= #963d97 >'''Laboratory quiz'''</font color> <br> [[20.109(F22):Homework#Due_M1D7|Homework due]] | | <font color= #963d97 >'''Laboratory quiz'''</font color> <br> [[20.109(F22):Homework#Due_M1D7|Homework due]] | ||
|-- | |-- | ||
| Line 79: | Line 77: | ||
| <font color = 999999>T/W Oct 11/12 </font color> | | <font color = 999999>T/W Oct 11/12 </font color> | ||
| | | | ||
| − | | <font color = #642664>'''Indigenous Peoples' Day | + | | <font color = #642664>'''Indigenous Peoples' Day holiday'''</font color> |
| − | | | + | | [[20.109(F22):Data Summary| <font color = #b3251c>'''Data Summary draft due'''</font color>]] Wed, Oct 12 at 10 pm <br> [https://app.slack.com/client/T01KU1VLZQB/C043RJYMC3B Blog post due] Thu, Oct 13 at 10 pm |
|-- | |-- | ||
| M2D1 | | M2D1 | ||
| R/F Oct 13/14 | | R/F Oct 13/14 | ||
| − | | [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> | + | | [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> [[Media:L01 Intro Drug Discovery 20.109 Niles (presented).pdf | Lecture slides]] |
| − | | [[20.109(F22):M2D1 | | + | | [[20.109(F22):M2D1 |Complete in-silico cloning of protein expression plasmid]] <br> [[Media:Fa22 M2D1 bcm marked.pdf | T/R prelab]] <br> [[Media:Fa22_M2D1_jz.pdf | W/F prelab ]] |
| [[20.109(F22):Homework#Due_M2D1|Homework due]] | | [[20.109(F22):Homework#Due_M2D1|Homework due]] | ||
|-- | |-- | ||
| M2D2 | | M2D2 | ||
| T/W Oct 18/19 | | T/W Oct 18/19 | ||
| − | | [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> | + | | [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> [[Media:L02 Therapeutic Target Selection 20.109 (Niles-presented).pdf | Lecture Slides]] |
| − | | [[20.109(F22):M2D2 | | + | | [[20.109(F22):M2D2 |Perform protein purification protocol]] <br> [[Media:Fa22 M2D2 bcm marked.pdf | T/R prelab]]<br> [[Media:Fa22 M2D2 jz.pdf | W/F prelab]] |
| [[20.109(F22):Homework#Due_M2D2|Homework due]] | | [[20.109(F22):Homework#Due_M2D2|Homework due]] | ||
|-- | |-- | ||
| M2D3 | | M2D3 | ||
| R/F Oct 20/21 | | R/F Oct 20/21 | ||
| − | | [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> | + | | [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> [[Media:L03 Choosing an Intervention Modality 20.109 (Niles-presented).pdf| Lecture slides]] |
| − | | [[20.109(F22):M2D3 | | + | | [[20.109(F22):M2D3 |Assess purity and concentration of purified protein]] <br> [[Media:Fa22 M2D3 bcm.pdf | T/R prelab]] <br> [[Media:Fa22 M2D3 jz.pdf | W/F prelab]] |
| − | | [[20.109(F22):Homework#Due_M2D3|Homework due]] | + | | [[20.109(F22):Homework#Due_M2D3|Homework due]] <br> [[20.109(F22):Data Summary| <font color = #b3251c>'''Data Summary revision due'''</font color>]] Sat, Oct 22 at 10 pm <br> |
|-- | |-- | ||
| M2D4 | | M2D4 | ||
| T/W Oct 25/26 | | T/W Oct 25/26 | ||
| − | | [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> | + | | [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> [[Media:L04 Introduction to Screening I.pdf|Lecture slides]] |
| − | | [[20.109(F22):M2D4 | | + | | [[20.109(F22):M2D4 |Review small molecule microarray (SMM) technology and data analysis used to identify hits]] <br> [[Media:Fa22 M2D4 bcm marked.pdf | T/R prelab]] <br> [[Media:Fa22 M2D4 jz.pdf | W/F prelab]] |
| <font color= #963d97 >'''Laboratory quiz'''</font color> <br> [[20.109(F22):Homework#Due_M2D4|Homework due]] | | <font color= #963d97 >'''Laboratory quiz'''</font color> <br> [[20.109(F22):Homework#Due_M2D4|Homework due]] | ||
|-- | |-- | ||
| M2D5 | | M2D5 | ||
| R/F Oct 27/28 | | R/F Oct 27/28 | ||
| − | | [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> | + | | [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> [[Media:L05 Intro to Phenotypic Screening (Niles-presented).pdf|Lecture slides]] |
| − | + | | [[20.109(F22):M2D5 |Prepare protein for functional assay]] <br> [[Media:Fa22 M2D5 bcm.pdf | T/R prelab]] <br> [[Media:Fa22 M2D5 jz.pdf | W/F prelab]] | |
| − | | [[20.109(F22): | + | |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| [[20.109(F22):Homework#Due_M2D5|Homework due]] | | [[20.109(F22):Homework#Due_M2D5|Homework due]] | ||
|-- | |-- | ||
| Line 121: | Line 113: | ||
| T/W Nov 1/2 | | T/W Nov 1/2 | ||
| | | | ||
| − | | [[20.109(F22):Journal | + | | [[20.109(F22):Journal article presentation| <font color = #b3251c>'''Journal article presentations'''</font color>]] |
| | | | ||
|-- | |-- | ||
| Line 127: | Line 119: | ||
| R/F Nov 3/4 | | R/F Nov 3/4 | ||
| | | | ||
| − | | [[20.109(F22):Journal | + | | [[20.109(F22):Journal article presentation| <font color = #b3251c>'''Journal article presentations'''</font color>]] |
| − | | [ Blog post due] Sat, Nov 5 at 10 pm | + | | [https://app.slack.com/client/T01KU1VLZQB/C043RJYMC3B Blog post due] Sat, Nov 5 at 10 pm |
|-- | |-- | ||
| M2D6 | | M2D6 | ||
| T/W Nov 8/9 | | T/W Nov 8/9 | ||
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> | | [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> | ||
| − | | [[20.109(F22): | + | | [[20.109(F22):M2D6 |Complete data analysis of functional assay results]] <br> [[Media:Fa22 M2D6 bcm.pdf | T/R Prelab]] <br> [[Media:Fa22 M2D6 jz.pdf | W/F Prelab]] <br> |
| [[20.109(F22):Homework#Due_M2D5|Homework due]] | | [[20.109(F22):Homework#Due_M2D5|Homework due]] | ||
|-- | |-- | ||
| Line 139: | Line 131: | ||
| <font color = 999999>R/F Nov 10/11 </font color> | | <font color = 999999>R/F Nov 10/11 </font color> | ||
| | | | ||
| − | | <font color = #642664>'''Veterans' Day | + | | <font color = #642664>'''Veterans' Day holiday'''</font color> |
| | | | ||
|-- | |-- | ||
| Line 145: | Line 137: | ||
| T/W Nov 15/16 | | T/W Nov 15/16 | ||
| [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> | | [http://be.mit.edu/directory/jacquin-c-niles JCN] <br> | ||
| − | | [[20.109(F22):M2D7 | | + | | [[20.109(F22):M2D7 |Evaluate protein structures]] <br> [[Media:Fa22 RA discussion TR notes.pdf|T/R Prelab]] <br> [[Media:Fa22 RA discussion WF notes.pdf|W/F prelab]] |
| <font color= #963d97 >'''Laboratory quiz'''</font color> <br> [[20.109(F22):Homework#Due_M2D7|Homework due]] | | <font color= #963d97 >'''Laboratory quiz'''</font color> <br> [[20.109(F22):Homework#Due_M2D7|Homework due]] | ||
|-- | |-- | ||
| Line 151: | Line 143: | ||
| R/F Nov 17/18 | | R/F Nov 17/18 | ||
| [http://be.mit.edu/directory/noreen-lyell NLL]<br> | | [http://be.mit.edu/directory/noreen-lyell NLL]<br> | ||
| − | | [[20.109(F22):M3D1 |Brainstorm ideas for Research proposal presentation]] <br> | + | | [[20.109(F22):M3D1 |Brainstorm ideas for Research proposal presentation]] <br> [[Media:Fa22 M3D1 bcm.pdf|T/R prelab]] <br> [[Media:Fa22 M3D1 bcm.pdf|W/F prelab]] |
| [[20.109(F22):Homework#Due_M3D1|Homework due]] <br> | | [[20.109(F22):Homework#Due_M3D1|Homework due]] <br> | ||
|-- | |-- | ||
| Line 157: | Line 149: | ||
| <font color = 999999>T/W Nov 22/23 </font color> | | <font color = 999999>T/W Nov 22/23 </font color> | ||
| | | | ||
| − | | <font color = #642664>'''Thanksgiving Day | + | | <font color = #642664>'''Thanksgiving Day holiday'''</font color> |
| − | | [[20.109(F22):Research article| <font color = #b3251c>'''Research article due'''</font color>]] Mon, Nov 21 at 10 pm <br> [ Blog post due] Tue, Nov 22 at 10 pm | + | | [[20.109(F22):Research article| <font color = #b3251c>'''Research article due'''</font color>]] Mon, Nov 21 at 10 pm <br> [https://app.slack.com/client/T01KU1VLZQB/C043RJYMC3B Blog post due] Tue, Nov 22 at 10 pm |
|-- | |-- | ||
| | | | ||
| <font color = 999999>R/F Nov 24/25 </font color> | | <font color = 999999>R/F Nov 24/25 </font color> | ||
| | | | ||
| − | | <font color = #642664>'''Thanksgiving Day | + | | <font color = #642664>'''Thanksgiving Day holiday'''</font color> |
| | | | ||
|-- | |-- | ||
| − | | | + | | M3D2 |
| T/W Nov 29/30 | | T/W Nov 29/30 | ||
| − | | [AB]<br> | + | | [http://be.mit.edu/directory/angela-belcher AB]<br> |
| − | | | + | | [[20.109(F22):M3D2 |Pitch research proposal presentation ideas ]] <br> |
| | | | ||
|-- | |-- | ||
| − | | | + | | M3D3 |
| R/F Dec 1/2 | | R/F Dec 1/2 | ||
| − | | Comm Lab | + | | BE Comm Lab |
| − | | [[20.109(F22): | + | | [[20.109(F22):M3D3 |Develop ideas for Research proposal presentation ]] <br> [[Media:Fa22 M3D3 prelab nll.pdf| T/R prelab]] <br> [[Media:Fa22 M3D3 prelab nll.pdf| W/F prelab]] |
| − | | [[20.109(F22):Homework# | + | | [[20.109(F22):Homework#Due_M3D3|Homework due]]<br> |
|-- | |-- | ||
| − | | | + | | M3D4 |
| T/W Dec 6/7 | | T/W Dec 6/7 | ||
| [http://be.mit.edu/directory/noreen-lyell NLL] <br> | | [http://be.mit.edu/directory/noreen-lyell NLL] <br> | ||
| − | | [[20.109(F22): | + | | [[20.109(F22):M3D4 |Participate in Research proposal peer reviews]] <br> |
| − | | [[20.109(F22):Homework# | + | | [[20.109(F22):Homework#Due_M3D4|Homework due]] |
|-- | |-- | ||
| | | | ||
| Line 188: | Line 180: | ||
| | | | ||
| [[20.109(F22):Research proposal presentation| <font color = #b3251c>'''Research proposal presentations'''</font color>]] | | [[20.109(F22):Research proposal presentation| <font color = #b3251c>'''Research proposal presentations'''</font color>]] | ||
| − | | [ Blog post due] Sat, Dec 10 at 10 pm | + | | [https://app.slack.com/client/T01KU1VLZQB/C043RJYMC3B Blog post due] Sat, Dec 10 at 10 pm |
|-- | |-- | ||
| | | | ||
| T Dec 13 | | T Dec 13 | ||
| − | | <font color = # | + | | <font color = #642664>'''Celebration lunch!'''</font color> <br> |
| | | | ||
| | | | ||
|} | |} | ||
</div> | </div> | ||
Latest revision as of 17:51, 2 December 2022
Welcome to 20.109! It is our goal to make this class a useful and fun introduction to the experiments and techniques used in biological engineering. Though there is not enough time to show you everything needed to do research, after this class you will feel confident and familiar with some fundamental experimental approaches and laboratory protocols. You will develop good habits at the bench, which will increase the likelihood of success in your work and ensure the health and safety of you and your labmates. By the end of the semester, you will also be well-versed in good scientific practices - through your experience with scientific writing, notebook keeping, and orally presenting data and novel ideas. All of us involved in teaching 20.109 hope you will find it a satisfying challenge and an exciting experience that has lasting value.
SCHEDULE DETAILS:
Lecture times: Tuesday (T) and Thursday (R) 11 - 12 pm in 16-220
Laboratory section times: Tuesday (T) and Thursday (R) 1 - 5 pm or Wednesday (W) and Friday (F) 1 - 5 pm in 56-322
ABSENCE POLICY:
Absences from lecture: Attendance will be recorded for participation points throughout the semester. If absent, student is responsible for all information provided in lecture.
Absences from laboratory: Excused absences should be discussed with the Instructors as soon as possible. Because make-up laboratory time is not provided, attendance in another section may be required to complete the necessary experiments. Unexcused absences will result in a 1/3 of a letter grade deduction from the final grade on the major assignment for the module (for example, a B+ would become a B).
